Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 2.2e-213 745.3 379 100.0
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.8e-136 488.8 379 71.2
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 5.1e-117 425.2 379 65.7
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.1e-92 344.4 348 57.2
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 8.2e-91 338.2 347 56.8
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 1.2e-89 334.3 330 58.5
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.5e-89 334.0 330 58.2
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 7.7e-89 331.6 338 57.4
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.3e-88 330.9 330 57.9
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 3.2e-87 326.2 321 58.6
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 2.7e-86 323.2 346 55.2
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 1.1e-84 317.8 329 56.8
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 2.6e-84 316.6 323 57.0
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 4.4e-84 315.8 329 56.2
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.3e-83 314.3 314 57.6
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 2.8e-83 313.2 329 55.3
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 4.8e-83 312.4 317 57.4
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.8e-83 312.4 333 56.2
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 8.2e-83 311.6 317 56.8
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.8e-82 310.5 351 53.3
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.8e-82 310.5 317 57.1
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 3.1e-82 309.7 334 55.1
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 3.1e-82 309.7 317 56.8
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 4.1e-82 309.3 370 51.6
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 9.1e-82 308.1 350 53.7
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.6e-81 307.4 316 56.3
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.6e-81 306.6 329 53.5
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.6e-81 306.6 321 55.8
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 2.6e-81 306.6 339 53.7
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 3.5e-81 306.2 317 56.5
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.5e-81 306.2 313 56.9
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 4.5e-81 305.8 317 55.5
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 4.5e-81 305.8 321 55.5
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 5.9e-81 305.4 340 54.1
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 5.9e-81 305.4 347 53.6
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 5.9e-81 305.4 328 56.4
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 7.7e-81 305.1 320 55.6
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.0e-80 304.7 343 52.8
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 2.2e-80 303.5 318 55.7
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 8.5e-80 301.6 320 56.6
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.1e-79 301.2 350 52.0
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.5e-79 300.8 322 53.7
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.5e-79 300.8 322 53.7
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.5e-79 300.8 322 53.7
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.5e-79 300.8 390 49.5
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 1.9e-79 300.4 319 53.9
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 4.2e-79 299.3 319 53.6
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 4.2e-79 299.3 350 52.0
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 5.5e-79 298.9 325 55.1
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 9.4e-79 298.1 346 52.9
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 2.1e-78 297.0 321 53.0
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 3.6e-78 296.2 312 55.8
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 3.6e-78 296.2 320 53.8
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 4.7e-78 295.8 325 55.1
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.4e-77 294.3 309 55.7
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.4e-77 294.3 309 55.7
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 1.8e-77 293.9 322 53.4
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.8e-77 293.9 320 52.5
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 2.3e-77 293.5 386 48.7
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 3.0e-77 293.1 322 52.8
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.0e-77 292.7 342 52.3
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 5.2e-77 292.4 321 54.2
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 6.7e-77 292.0 372 49.7
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 8.8e-77 291.6 316 55.4
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 1.2e-76 291.2 314 53.8
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.2e-76 291.2 311 55.9
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 2.0e-76 290.4 349 51.3
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 2.6e-76 290.0 304 55.9
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 4.4e-76 289.3 317 53.9
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 5.7e-76 288.9 272 58.8
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 5.7e-76 288.9 371 48.5
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 7.5e-76 288.5 328 52.7
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 7.5e-76 288.5 318 53.5
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 8.2e-75 285.0 247 60.3
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 1.1e-74 284.6 305 53.8
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 4.1e-74 282.7 309 54.4
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.7e-73 280.0 307 53.7
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 5.9e-73 278.9 310 51.3
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 7.7e-73 278.5 233 64.4
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.0e-72 278.1 247 58.7
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.0e-72 278.1 232 65.1
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.9e-72 276.6 327 51.4
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.9e-72 276.6 327 51.4
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 3.8e-72 276.2 323 52.9
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 9.4e-71 271.6 349 49.9
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 6.1e-70 268.9 338 49.4
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 2.3e-69 266.9 304 49.7
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 4.4e-68 262.7 366 47.5
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 3.7e-67 259.6 318 49.1
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 4.1e-66 256.1 241 58.1
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 2.0e-65 253.8 252 56.0
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.1e-63 248.1 275 54.5
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 2.1e-62 243.8 245 54.3
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.0e-61 241.5 280 53.9
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 1.8e-61 240.7 320 46.6
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.0e-61 240.0 264 51.1
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 2.0e-60 237.3 243 54.7
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 2.6e-60 236.9 325 48.6
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.7e-59 234.2 232 56.0
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 1.3e-56 224.6 245 52.7
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 8.6e-56 221.9 330 44.8
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 5.6e-55 219.2 258 52.3
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.8e-53 214.2 267 49.8
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 4.4e-52 209.5 249 46.2
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 4.1e-50 203.0 149 69.1
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 2.7e-49 200.3 305 43.6
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.2e-44 184.9 183 56.3
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.1e-42 178.3 145 66.2
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.0e-40 171.8 181 56.9
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 1.3e-35 154.8 247 38.5
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 3.0e-32 143.7 319 36.7
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 8.6e-32 142.1 250 36.8
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 9.5e-31 138.7 215 44.7
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 3.1e-29 133.7 159 50.3
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 2.0e-28 131.0 159 49.7
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.4e-28 129.8 97 68.0
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.3e-27 128.3 95 68.4
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 2.2e-27 127.5 94 69.1
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 3.8e-27 126.7 238 37.4
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 4.2e-26 123.2 91 68.1
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 1.7e-24 117.9 351 31.3
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 2.5e-23 114.0 232 38.4
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 2.0e-20 104.4 71 70.4
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 6.4e-19 99.4 256 34.4
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 1.3e-16 91.7 57 75.4
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 9.0e-13 79.0 126 44.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 1.5e-12 78.2 47 76.6
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.7e-09 67.4 244 29.1
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.0e-08 65.5 97 43.3
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.3e-08 65.1 70 52.9
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 3.9e-08 63.5 97 42.3
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.1e-07 62.0 62 53.2


User provided reference genes

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