Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 3.3e-256 887.9 445 100.0
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.6e-160 569.3 446 70.9
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 3.0e-140 502.7 446 62.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-136 489.2 441 61.2
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 7.5e-136 488.0 449 60.4
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.9e-134 483.4 446 59.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-134 483.4 441 59.4
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.4e-134 481.9 441 59.9
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 7.0e-134 481.5 447 60.2
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 4.6e-133 478.8 446 59.2
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.6e-133 478.8 447 59.3
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 6.0e-133 478.4 447 58.8
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.7e-132 476.9 448 60.3
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 4.3e-131 472.2 445 59.8
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 9.5e-131 471.1 446 58.7
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 9.5e-131 471.1 448 58.5
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.8e-130 469.5 446 58.5
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.8e-130 469.5 446 58.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 8.1e-130 468.0 445 58.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.3e-129 466.5 446 59.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-128 464.2 446 58.3
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 7.5e-128 461.5 445 58.2
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 7.5e-128 461.5 447 56.4
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.9e-127 458.8 446 58.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 9.2e-126 454.5 445 56.9
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.6e-125 453.8 446 57.8
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 2.1e-125 453.4 446 55.6
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.1e-125 453.4 447 55.9
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 4.6e-125 452.2 445 57.5
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 4.6e-125 452.2 447 56.6
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.0e-124 451.1 448 57.6
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.0e-124 451.1 445 57.5
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.3e-124 450.7 450 56.4
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.7e-124 450.3 449 56.3
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.0e-124 449.5 446 56.5
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-123 447.6 445 57.1
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 4.3e-123 445.7 447 55.5
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 5.6e-123 445.3 448 56.2
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.5e-123 444.5 445 56.9
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.1e-122 443.4 447 54.8
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 4.7e-122 442.2 446 54.5
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.8e-121 440.3 445 54.8
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.8e-121 440.3 449 55.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 5.2e-121 438.7 450 53.6
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.2e-121 438.7 446 55.2
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 8.9e-121 438.0 446 53.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.0e-120 436.8 443 53.7
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 5.8e-120 435.3 440 55.9
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 9.9e-120 434.5 445 57.1
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 8.4e-119 431.4 444 53.6
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.1e-118 431.0 445 53.9
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 2.1e-117 426.8 444 53.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.7e-117 426.4 447 55.0
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.5e-117 426.0 441 54.2
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 4.6e-117 425.6 445 53.7
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.0e-116 424.5 444 54.3
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 2.3e-116 423.3 452 53.5
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.0e-116 422.9 445 54.8
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 6.6e-116 421.8 430 54.7
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.5e-115 420.6 446 54.5
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.9e-115 420.2 448 53.8
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.3e-115 419.5 445 53.7
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.6e-115 418.7 448 54.0
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 5.6e-115 418.7 445 54.2
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 3.6e-114 416.0 447 53.5
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.8e-114 415.6 441 53.5
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 4.8e-114 415.6 443 52.4
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 6.2e-114 415.2 440 52.0
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 8.1e-114 414.8 440 52.0
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 8.1e-114 414.8 443 54.4
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.4e-113 414.1 449 53.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.8e-113 413.7 448 53.6
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 4.0e-113 412.5 440 53.0
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.2e-112 411.0 448 53.1
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.5e-112 410.6 440 51.8
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.5e-112 410.6 446 52.2
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.4e-112 409.5 449 51.4
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 5.8e-112 408.7 445 54.2
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.3e-111 407.5 445 52.4
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.7e-111 407.1 445 52.1
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 2.2e-111 406.8 445 51.7
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.2e-111 406.8 446 53.4
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.9e-111 406.4 449 51.2
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.9e-111 406.4 440 52.3
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.8e-111 406.0 444 51.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 4.9e-111 405.6 444 52.9
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.9e-110 403.7 444 51.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.9e-110 403.7 450 51.8
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.6e-109 400.6 448 52.7
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 3.5e-109 399.4 452 51.3
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 6.0e-109 398.7 441 51.7
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 3.0e-108 396.4 448 52.0
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.1e-107 394.4 449 50.8
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.1e-107 394.4 446 50.4
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.5e-107 394.0 449 50.6
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.3e-107 392.5 446 50.2
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 5.6e-107 392.1 447 50.6
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 7.3e-107 391.7 441 51.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 7.3e-107 391.7 449 50.3
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 9.6e-107 391.3 447 49.7
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.1e-106 390.2 442 51.1
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.6e-106 389.4 406 55.7
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 3.6e-106 389.4 446 49.6
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 8.1e-106 388.3 447 49.2
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 4.0e-105 386.0 445 50.1
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-104 384.4 446 49.8
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.2e-104 384.4 330 64.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.1e-102 377.9 445 48.5
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.2e-101 374.4 448 49.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 4.6e-101 372.5 449 49.0
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 7.9e-101 371.7 461 47.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 7.9e-101 371.7 445 50.6
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.0e-100 371.3 442 48.2
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.3e-100 370.9 439 46.7
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 5.1e-100 369.0 446 48.4
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 5.6e-99 365.5 343 58.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.6e-98 364.0 342 59.9
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.8e-98 363.2 403 51.9
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 8.1e-98 361.7 446 47.3
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 8.1e-98 361.7 445 48.1
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.1e-97 361.3 451 46.8
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.8e-97 360.5 451 47.7
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.4e-97 360.1 486 47.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.1e-97 359.8 341 58.1
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.2e-96 357.8 445 45.2
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 7.6e-96 355.1 439 46.9
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 4.2e-94 349.4 449 45.9
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 4.6e-93 345.9 441 44.7
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.3e-92 344.4 444 44.6
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 3.9e-92 342.8 345 55.7
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.7e-90 336.3 439 44.6
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 8.2e-90 335.1 442 44.1
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 3.8e-87 326.2 346 54.3
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 3.2e-86 323.2 446 43.0
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-84 318.2 299 60.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 9.0e-81 305.1 436 40.8
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.2e-80 304.7 346 51.7
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.5e-80 304.3 453 43.0
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 4.5e-80 302.8 294 57.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 4.5e-80 302.8 233 73.4
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.1e-78 298.1 297 59.9
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.9e-78 297.4 341 50.4
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-77 294.3 296 56.1
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.0e-76 291.6 294 58.2
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.1e-75 288.1 336 50.6
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 4.8e-74 282.7 236 63.1
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.9e-71 273.5 327 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.4e-70 271.2 441 39.5
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 4.8e-66 256.1 295 51.9
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 4.8e-66 256.1 444 37.6
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.2e-64 251.5 448 37.9
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.7e-63 247.7 194 66.0
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.2e-63 247.3 335 43.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 4.2e-62 243.0 294 50.0
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.2e-61 241.5 296 49.3
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.6e-61 241.1 335 41.8
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.1e-59 235.0 438 32.4
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 5.0e-55 219.5 439 35.8
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 5.5e-54 216.1 444 32.0
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 7.2e-54 215.7 333 41.4
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.0e-52 209.9 321 40.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-51 206.8 140 73.6
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.8e-49 201.1 179 58.1
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 5.9e-40 169.5 154 57.1
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-39 168.7 131 70.2
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-38 165.2 128 69.5
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.6e-35 154.1 138 58.7
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.1e-28 130.6 161 51.6
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.2e-21 108.6 59 81.4
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.4e-19 100.1 57 82.5
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.9e-18 96.7 149 32.9
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.1e-17 95.5 133 42.9
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.9e-15 87.0 54 63.0
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 8.1e-13 79.3 117 39.3
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 2.6e-11 74.3 79 59.5
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-08 65.5 45 68.9
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 8.6e-07 59.3 103 38.8
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 1.1e-06 58.9 341 21.7


User provided reference genes

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