Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 1.1e-149 533.5 301 100.0
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 6.0e-121 438.0 301 84.7
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 4.1e-109 398.7 303 79.5
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.4e-64 250.8 317 53.0
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 1.2e-63 247.7 340 47.9
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 2.6e-63 246.5 180 73.3
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 1.7e-62 243.8 325 53.5
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 1.4e-61 240.7 214 61.7
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 3.2e-61 239.6 314 53.2
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 2.0e-60 236.9 165 72.7
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 1.0e-59 234.6 351 44.4
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 3.0e-59 233.0 258 59.3
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 3.9e-59 232.6 315 51.4
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 2.5e-58 229.9 299 52.2
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 2.5e-58 229.9 244 52.0
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 5.6e-58 228.8 182 68.7
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 1.2e-57 227.6 348 46.8
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.6e-57 227.3 256 55.5
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 3.6e-57 226.1 256 54.7
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 4.7e-57 225.7 256 55.1
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 8.0e-57 224.9 297 51.2
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.8e-56 223.8 220 56.4
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 2.3e-56 223.4 181 63.0
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 3.1e-56 223.0 183 65.0
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 4.0e-56 222.6 288 47.2
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.5e-55 220.7 181 61.9
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.0e-55 220.3 199 61.8
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 2.0e-55 220.3 180 63.3
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.6e-55 219.9 194 60.3
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 3.4e-55 219.5 305 48.2
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 4.4e-55 219.2 203 56.7
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 4.4e-55 219.2 164 70.1
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 5.8e-55 218.8 213 56.8
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.7e-54 217.2 285 54.4
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 2.2e-54 216.9 285 48.4
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 2.2e-54 216.9 297 49.8
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.9e-54 216.5 182 64.3
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 4.9e-54 215.7 149 73.2
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 8.3e-54 214.9 304 48.7
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 1.1e-53 214.5 348 46.8
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 1.1e-53 214.5 297 49.2
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 1.9e-53 213.8 300 48.7
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.1e-53 212.6 297 47.5
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 5.4e-53 212.2 169 65.1
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 5.4e-53 212.2 291 51.9
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 1.6e-52 210.7 172 64.0
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 4.6e-52 209.1 165 64.8
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 6.0e-52 208.8 329 45.0
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 7.8e-52 208.4 166 65.1
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.3e-51 207.6 154 67.5
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 1.7e-51 207.2 278 47.5
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 3.0e-51 206.5 307 47.6
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 3.0e-51 206.5 312 49.4
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 3.9e-51 206.1 150 68.0
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 3.9e-51 206.1 150 68.0
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 3.9e-51 206.1 150 68.0
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 3.9e-51 206.1 150 68.0
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 5.1e-51 205.7 134 76.1
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 5.1e-51 205.7 140 72.1
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 6.6e-51 205.3 328 44.5
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 1.5e-50 204.1 150 67.3
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 1.5e-50 204.1 144 70.1
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 3.3e-50 203.0 344 41.3
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.3e-50 203.0 190 57.4
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 5.6e-50 202.2 156 65.4
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 7.3e-50 201.8 357 41.5
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 9.5e-50 201.4 276 48.2
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 9.5e-50 201.4 297 46.5
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 2.1e-49 200.3 303 45.2
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.1e-49 200.3 357 41.2
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.8e-49 199.9 134 73.1
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 2.8e-49 199.9 145 69.0
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 2.3e-48 196.8 358 42.5
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 3.1e-48 196.4 324 42.9
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 4.0e-48 196.1 149 65.8
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 4.0e-48 196.1 198 57.1
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 4.0e-48 196.1 141 70.9
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 5.2e-48 195.7 361 41.8
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.2e-47 194.5 132 74.2
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.2e-47 194.5 289 46.7
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.2e-47 194.5 289 46.7
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 1.2e-47 194.5 145 66.2
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 1.5e-47 194.1 334 44.9
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 4.4e-47 192.6 195 55.9
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 7.5e-47 191.8 221 52.5
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 9.9e-47 191.4 181 56.9
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.3e-46 191.0 302 46.0
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.7e-46 190.7 153 65.4
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 2.9e-46 189.9 309 42.4
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 3.7e-46 189.5 303 46.2
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 3.7e-46 189.5 212 53.3
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 3.7e-46 189.5 212 53.3
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 6.4e-46 188.7 255 48.6
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.3e-46 188.3 153 64.7
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.3e-46 188.3 153 64.7
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 8.3e-46 188.3 374 39.6
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 1.4e-45 187.6 306 42.8
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 2.4e-45 186.8 307 43.3
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 3.2e-45 186.4 151 64.2
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.2e-44 184.5 154 61.7
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 2.7e-44 183.3 269 48.0
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 7.8e-44 181.8 221 48.0
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.0e-43 181.4 300 45.7
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.0e-43 181.4 316 44.3
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 1.7e-43 180.6 175 57.1
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.9e-43 179.5 249 46.6
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 5.1e-43 179.1 310 43.5
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 5.1e-43 179.1 182 56.6
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 8.6e-43 178.3 303 42.9
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 1.1e-42 177.9 285 45.3
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 4.3e-42 176.0 315 42.2
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 4.3e-42 176.0 188 53.7
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 1.2e-41 174.5 314 43.9
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 1.6e-41 174.1 183 55.2
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.6e-41 174.1 298 44.6
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 8.9e-40 168.3 136 65.4
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 2.0e-39 167.2 153 59.5
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 2.6e-39 166.8 212 48.1
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 4.4e-39 166.0 145 60.0
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 7.6e-39 165.2 278 41.7
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 7.6e-39 165.2 165 57.0
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.2e-38 163.7 131 61.8
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 3.8e-38 162.9 132 62.9
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 1.4e-37 161.0 134 64.9
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 3.5e-36 156.4 153 59.5
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 2.3e-35 153.7 316 37.0
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 2.0e-31 140.6 146 55.5
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.1e-29 134.8 93 72.0
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 2.7e-28 130.2 138 48.6
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 2.8e-25 120.2 132 46.2
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 8.1e-25 118.6 154 42.9
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 3.4e-23 113.2 251 38.6
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 3.8e-22 109.8 89 61.8
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.4e-21 107.1 574 25.3
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 5.4e-21 105.9 136 47.8
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 3.7e-17 93.2 107 43.9
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.4e-16 90.5 133 38.3
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 4.0e-16 89.7 83 62.7
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 2.6e-15 87.0 100 53.0
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 6.4e-14 82.4 180 32.8
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 1.4e-13 81.3 81 49.4
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.2e-12 78.2 169 31.4
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 3.3e-10 70.1 57 59.6
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 1.6e-09 67.8 140 32.1


User provided reference genes

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