Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 2.0e-19 98.6 68 100.0
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.5e-16 87.8 68 85.3
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 3.5e-16 87.8 68 91.2
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.5e-16 87.4 68 86.8
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.5e-16 87.4 68 86.8
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 2.5e-14 81.6 68 66.2
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 2.5e-14 81.6 68 66.2
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 2.5e-14 81.6 68 66.2
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 5.5e-14 80.5 68 66.2
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 7.2e-14 80.1 68 64.7
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.2e-13 79.3 68 79.4
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 2.1e-13 78.6 69 76.8
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 2.1e-13 78.6 68 63.2
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 73.5
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 61.8
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.4e-12 75.9 68 61.8
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 68 80.9
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.3e-12 75.1 68 75.0
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.3e-12 75.1 68 70.6
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 74.2
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 4.0e-12 74.3 68 76.5
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 4.0e-12 74.3 68 77.9
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 4.0e-12 74.3 68 57.4
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 5.2e-12 73.9 68 72.1
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.8e-12 73.6 66 77.3
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 6.8e-12 73.6 66 60.6
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 8.8e-12 73.2 68 58.8
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.5e-11 72.4 68 79.4
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.6e-11 71.6 66 75.8
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.6e-11 71.6 65 66.2
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 4.4e-11 70.9 66 71.2
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 69.1
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 5.7e-11 70.5 68 60.3
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 5.7e-11 70.5 68 69.1
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 7.5e-11 70.1 66 72.7
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 7.5e-11 70.1 66 68.2
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 9.8e-11 69.7 65 60.0
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 9.8e-11 69.7 65 60.0
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 9.8e-11 69.7 66 68.2
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 58.2
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.7e-10 68.9 68 63.2
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 2.2e-10 68.6 68 73.5
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 2.8e-10 68.2 62 74.2
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 3.7e-10 67.8 68 75.0
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 3.7e-10 67.8 64 56.2
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 3.7e-10 67.8 68 76.5
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 52.9
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 52.9
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 76.5
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 4.8e-10 67.4 66 74.2
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 6.3e-10 67.0 62 58.1
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 1.1e-09 66.2 68 67.6
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 62.1
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 1.1e-09 66.2 62 59.7
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 51.5
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 51.5
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 72.1
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 51.5
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 72.1
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 74.2
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 70.6
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 74.2
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 53.0
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.4e-09 65.1 66 72.7
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 70.6
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 72.1
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 4.1e-09 64.3 66 62.1
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 4.1e-09 64.3 68 70.6
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 4.1e-09 64.3 67 67.2
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 5.4e-09 63.9 66 72.7
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 5.4e-09 63.9 65 67.7
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 7.0e-09 63.5 68 70.6
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 7.0e-09 63.5 66 54.5
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 70.6
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 9.1e-09 63.2 66 51.5
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 9.1e-09 63.2 60 71.7
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 54.4
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.2e-08 62.8 92 48.9
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 1.2e-08 62.8 68 75.0
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 1.2e-08 62.8 68 66.2
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 71.2
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.6e-08 62.4 68 70.6
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.6e-08 62.4 61 57.4
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 1.6e-08 62.4 69 66.7
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 1.6e-08 62.4 64 53.1
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 2.0e-08 62.0 67 59.7
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 2.0e-08 62.0 67 59.7
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 51.5
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 2.0e-08 62.0 61 73.8
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 50.0
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.5e-08 61.2 66 71.2
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 4.5e-08 60.8 67 55.2
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 5.9e-08 60.5 68 63.2
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 5.9e-08 60.5 69 72.5
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 5.9e-08 60.5 63 55.6
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 70.6
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 70.6
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 7.7e-08 60.1 66 68.2
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 7.7e-08 60.1 66 51.5
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 7.7e-08 60.1 63 50.8
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 70.6
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 67.6
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 69.7
Potri.004G107100 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 72.1
Potri.004G107800 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 72.1
Potri.004G107900 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 72.1
Sabra04G0074800 Salix brachista HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 66.2
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 52.2
Oeu049338.1 Olea europaea HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 69.7
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 69.7
CiPaw.03G007000 Carya illinoinensis HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 66.7
CiPaw.04G005400 Carya illinoinensis HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 69.1
Solyc02g089580.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 69.7
FAN09G4825 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 69.1
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 63.6
CiPaw.04G005500 Carya illinoinensis HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 67.6
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 5.0e-07 57.4 65 49.2
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 5.0e-07 57.4 65 49.2
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 5.0e-07 57.4 65 67.7
Ciclev10013788m.g Citrus clementina HOM05D002873 ORTHO05D002978 5.0e-07 57.4 68 69.1
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 6.6e-07 57.0 67 52.2
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 6.6e-07 57.0 67 52.2
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 6.6e-07 57.0 67 52.2
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 6.6e-07 57.0 66 69.7
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 6.6e-07 57.0 66 69.7
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 6.6e-07 57.0 34 82.4
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.6e-07 57.0 34 82.4
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 6.6e-07 57.0 34 82.4
Migut.K00873 Erythranthe guttata HOM05D002873 ORTHO05D002978 8.6e-07 56.6 66 69.7
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 62.1
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 62.1
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 1.1e-06 56.2 64 64.1
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 1.1e-06 56.2 60 73.3
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 1.5e-06 55.8 68 67.6
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.5e-06 55.8 62 45.2
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 1.5e-06 55.8 65 58.5
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 51.5
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 63 58.7
Peaxi162Scf00479g00427 Petunia axillaris HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 68.2
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.5e-06 55.1 36 75.0
SpUn0185_0020 Schrenkiella parvula HOM05D002873 ORTHO05D002978 3.3e-06 54.7 68 64.7
Actinidia36291 Actinidia chinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 59.1
Aa31LG9G16900 Aethionema arabicum HOM05D002873 ORTHO05D002978 4.2e-06 54.3 68 64.7
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 47.0
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 64 48.4
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 64 48.4
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 4.2e-06 54.3 64 48.4
Duzib138G1180 Durio zibethinus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 69 68.1
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 5.5e-06 53.9 70 48.6
MELO3C022081.2 Cucumis melo HOM05D002873 ORTHO05D002978 7.2e-06 53.5 37 78.4
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 7.2e-06 53.5 60 63.3
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 7.2e-06 53.5 68 69.1
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 9.5e-06 53.1 64 46.9
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 9.5e-06 53.1 64 46.9
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 9.5e-06 53.1 64 46.9
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 9.5e-06 53.1 64 46.9
FAN05G2856 Fragaria x ananassa HOM05D040180 ORTHO05D035606 9.5e-06 53.1 66 68.2
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 9.5e-06 53.1 72 47.2


User provided reference genes

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