Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 8.7e-182 640.2 326 100.0
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 2.9e-169 598.6 326 94.5
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.6e-125 452.6 326 76.1
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 3.4e-125 452.2 326 75.8
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 6.3e-124 448.0 326 72.7
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 2.3e-121 439.5 328 71.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 7.2e-120 434.5 313 73.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 9.5e-120 434.1 329 71.4
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.2e-119 433.7 327 71.9
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 2.8e-119 432.6 327 71.3
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.0e-118 430.6 326 69.0
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.0e-118 430.6 326 69.6
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 2.3e-118 429.5 275 78.9
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 3.0e-118 429.1 310 71.3
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 3.0e-118 429.1 297 75.1
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.2e-117 427.2 326 70.9
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 2.0e-117 426.4 270 81.1
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.6e-117 426.0 312 70.5
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 2.6e-117 426.0 310 71.3
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 9.8e-117 424.1 270 81.5
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 2.8e-116 422.5 337 69.7
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 3.7e-116 422.2 270 78.5
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.7e-116 422.2 330 68.2
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 4.9e-116 421.8 325 70.2
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 8.3e-116 421.0 298 74.2
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.1e-115 420.6 327 69.4
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.8e-115 419.9 331 69.8
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.4e-115 419.5 329 69.9
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 3.1e-115 419.1 276 77.5
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.1e-115 419.1 331 69.8
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 4.1e-115 418.7 275 76.4
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 5.4e-115 418.3 331 69.5
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.2e-114 417.2 326 70.9
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.7e-114 416.0 331 69.5
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 3.5e-114 415.6 325 69.5
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 4.5e-114 415.2 327 69.7
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 5.9e-114 414.8 266 78.2
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.3e-113 413.7 276 73.9
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 2.9e-113 412.5 326 69.9
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 3.8e-113 412.1 264 79.5
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 3.8e-113 412.1 271 76.0
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 6.6e-113 411.4 297 72.1
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.5e-112 409.5 309 71.5
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 4.3e-112 408.7 276 77.9
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 5.6e-112 408.3 323 68.4
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 9.5e-112 407.5 272 76.8
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 1.2e-111 407.1 272 76.1
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.1e-111 406.4 271 77.9
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 3.6e-111 405.6 274 76.3
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 4.7e-111 405.2 309 69.9
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 4.7e-111 405.2 235 88.1
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.1e-111 404.8 326 67.8
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 8.0e-111 404.4 267 78.7
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 4.0e-110 402.1 326 66.9
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 8.9e-110 401.0 330 68.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.5e-109 400.2 302 71.2
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 3.4e-109 399.1 327 66.4
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 4.4e-109 398.7 308 69.5
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 4.4e-109 398.7 274 74.8
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 3.7e-108 395.6 273 74.7
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 3.7e-108 395.6 273 74.7
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 6.4e-108 394.8 291 71.8
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 8.3e-108 394.4 329 66.3
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 8.3e-108 394.4 327 67.0
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.4e-107 393.7 327 66.1
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 4.1e-107 392.1 326 65.6
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 7.0e-107 391.3 282 72.0
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 9.2e-107 391.0 330 64.5
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 2.0e-106 389.8 289 70.9
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 2.7e-106 389.4 326 65.6
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.5e-106 389.0 245 78.4
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.5e-106 389.0 269 74.7
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.6e-106 388.7 326 64.7
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 7.8e-106 387.9 315 65.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.5e-104 382.9 269 74.7
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.6e-103 380.2 275 72.0
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.1e-103 379.8 326 64.7
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 2.8e-103 379.4 328 63.1
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 3.6e-103 379.0 327 65.4
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 8.0e-103 377.9 272 73.9
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.8e-102 376.7 327 63.3
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 5.2e-102 375.2 278 70.1
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.2e-102 375.2 267 72.7
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.2e-101 374.0 293 70.0
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.6e-101 372.9 298 66.4
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 4.4e-101 372.1 308 67.2
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 3.7e-100 369.0 273 71.8
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.1e-99 367.5 270 71.1
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 5.4e-99 365.2 235 78.3
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.4e-99 365.2 270 70.4
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.6e-98 363.6 331 62.5
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.0e-98 363.2 295 68.5
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 7.8e-98 361.3 327 63.3
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 5.0e-97 358.6 328 61.3
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 5.6e-96 355.1 332 60.2
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.2e-93 347.4 314 61.1
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.3e-89 334.0 249 69.5
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.1e-88 330.9 272 64.3
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 2.0e-85 320.1 285 59.6
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.6e-85 319.7 240 70.8
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.4e-84 315.1 253 65.6
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 2.4e-83 313.2 269 63.2
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.3e-81 306.6 333 52.9
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.8e-78 297.0 327 54.4
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 4.9e-76 288.9 331 51.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.6e-74 283.9 240 62.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 2.3e-73 280.0 170 82.4
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.5e-72 276.6 186 76.9
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.2e-68 263.5 172 76.2
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 5.1e-65 252.3 265 53.2
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 6.4e-60 235.3 237 55.3
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 7.1e-59 231.9 211 57.3
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 1.3e-57 227.6 291 48.1
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.2e-45 188.0 134 71.6
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 8.5e-44 181.8 267 45.3
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 1.4e-41 174.5 182 55.5
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 4.2e-27 126.3 81 76.5
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.2e-26 124.8 119 56.3
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 5.7e-24 115.9 83 74.7
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 2.8e-23 113.6 83 73.5
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.1e-22 111.7 83 73.5
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.6e-10 71.2 66 59.1
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 6.1e-10 69.3 66 59.1


User provided reference genes

Program Settings