Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 7.0e-298 1026.5 527 100.0
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.6e-262 907.9 533 88.6
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.9e-215 752.7 527 75.7
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.1e-205 720.3 510 72.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.1e-205 720.3 530 70.9
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 9.0e-205 717.2 479 76.4
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.2e-204 716.8 540 70.4
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 7.7e-204 714.1 520 72.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 7.7e-204 714.1 462 77.9
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.2e-203 712.6 497 73.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 7.9e-201 704.1 541 68.0
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.0e-200 703.7 535 70.7
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.8e-200 703.0 534 70.0
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 8.8e-200 700.7 532 69.9
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 8.8e-200 700.7 540 69.6
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.0e-199 699.5 476 73.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.3e-199 698.4 534 70.0
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.7e-199 698.0 533 69.8
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.3e-198 696.8 533 69.6
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.8e-198 695.7 503 72.0
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.7e-198 695.3 533 69.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 3.7e-198 695.3 518 70.7
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.8e-197 693.0 468 74.8
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 9.1e-197 690.6 480 73.3
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.3e-195 686.8 529 68.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 2.9e-195 685.6 499 70.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 5.0e-195 684.9 520 71.2
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 6.5e-195 684.5 533 68.5
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 8.5e-195 684.1 476 73.5
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-194 683.7 470 74.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.9e-194 682.9 474 73.2
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.9e-194 682.9 474 73.2
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.2e-194 682.2 506 70.2
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 4.2e-194 681.8 528 68.4
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 5.5e-194 681.4 535 68.6
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 9.4e-194 680.6 506 69.8
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-193 679.1 524 68.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.6e-193 678.7 482 73.4
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.6e-193 678.7 523 68.1
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.4e-192 676.8 496 71.8
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.3e-192 676.0 531 67.2
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 3.9e-192 675.2 487 71.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.9e-192 675.2 521 67.4
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 6.7e-192 674.5 443 77.2
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.5e-191 673.3 462 74.2
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.6e-191 672.5 518 67.6
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.4e-191 671.0 518 67.4
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.3e-190 670.2 464 74.6
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.7e-190 669.8 518 68.7
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.8e-190 669.1 608 61.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 3.7e-190 668.7 532 67.9
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-189 667.2 532 66.2
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.1e-189 667.2 465 74.0
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 8.5e-187 657.5 471 70.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 8.5e-187 657.5 536 65.3
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.9e-186 656.4 463 71.3
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 3.2e-186 655.6 485 68.7
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 9.4e-186 654.1 490 68.2
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.0e-184 650.6 442 73.5
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-183 646.7 460 70.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 3.3e-183 645.6 529 66.5
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.7e-182 643.3 443 72.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.1e-181 639.0 491 67.0
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 7.0e-181 637.9 533 65.1
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 9.1e-181 637.5 529 64.8
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.0e-179 634.0 510 66.5
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.2e-179 632.9 535 62.4
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.2e-178 629.0 412 76.2
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 4.7e-177 625.2 462 69.5
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.4e-176 623.6 463 67.0
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.8e-176 623.2 479 66.2
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 8.8e-176 620.9 487 65.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 8.8e-176 620.9 524 62.0
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 6.3e-174 614.8 537 61.8
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 8.3e-174 614.4 534 61.4
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 8.3e-174 614.4 534 61.4
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.4e-173 613.6 536 61.6
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 9.1e-173 610.9 479 65.8
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.0e-172 609.8 538 60.4
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-171 607.1 535 61.7
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-171 607.1 528 61.9
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 3.8e-171 605.5 535 60.2
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.9e-170 603.2 468 65.8
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.5e-170 602.8 552 59.6
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 5.5e-170 601.7 481 64.4
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.6e-169 600.1 535 60.9
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.4e-168 597.0 411 73.0
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.4e-167 592.4 420 71.0
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 5.4e-165 585.1 401 73.1
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.7e-164 582.8 747 46.5
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 5.7e-159 565.1 400 71.5
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.7e-158 563.5 493 61.1
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 9.2e-157 557.8 488 61.7
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.9e-155 552.7 438 66.9
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 1.5e-154 550.4 473 61.7
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 5.6e-154 548.5 430 66.5
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 8.0e-153 544.7 483 60.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.3e-152 543.1 456 62.3
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.0e-152 542.3 538 57.1
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 5.2e-152 542.0 567 54.0
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.5e-151 540.4 537 56.1
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 5.8e-151 538.5 394 68.3
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 6.0e-148 528.5 408 68.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 2.5e-146 523.1 360 73.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.3e-146 522.3 532 56.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.3e-144 516.5 554 52.9
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 4.1e-133 479.2 464 55.8
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.1e-132 476.9 463 56.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-129 467.6 535 52.1
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 6.2e-129 465.3 470 52.3
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.6e-119 433.3 382 60.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.4e-119 433.0 453 55.4
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.7e-118 430.6 472 49.6
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.3e-115 421.0 460 50.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 9.6e-114 414.8 555 45.8
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.9e-90 337.4 277 67.5
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 3.1e-88 330.1 450 43.3
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 5.3e-88 329.3 452 41.4
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.0e-86 325.1 216 73.1
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 2.2e-86 323.9 411 48.9
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.9e-86 323.6 297 57.6
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 7.4e-82 308.9 368 49.2
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 5.5e-77 292.7 433 38.8
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.1e-61 241.9 227 60.4
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.7e-60 236.5 188 66.0
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-51 208.0 249 47.4
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 8.8e-51 205.7 160 63.1
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.3e-46 191.8 246 45.5
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-46 191.8 246 45.5
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.5e-45 188.3 168 63.1
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.9e-38 163.7 254 42.5
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-37 162.2 349 33.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-37 161.8 107 77.6
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 9.5e-37 159.1 123 65.9
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-36 158.7 246 40.7
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.2e-36 158.7 128 71.1
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.2e-36 158.7 117 68.4
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.6e-36 158.3 247 42.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.2e-35 153.3 99 78.8
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.8e-35 152.9 99 79.8
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.2e-34 152.1 136 64.7
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.0e-34 151.4 125 63.2
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.7e-33 148.3 97 74.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-30 138.7 100 68.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 2.8e-28 131.0 109 62.4
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.0e-27 127.1 136 52.9
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.8e-26 123.2 96 63.5
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 9.2e-24 115.9 79 73.4
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.9e-21 108.2 136 52.2
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 9.5e-21 105.9 102 64.7
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.6e-20 105.1 250 31.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.6e-20 105.1 245 33.5
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.8e-20 104.4 223 35.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.0e-18 98.2 63 73.0
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.0e-18 98.2 94 48.9
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.3e-17 95.5 63 71.4
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.1e-16 92.4 134 48.5
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 2.1e-15 88.2 153 33.3
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 2.3e-14 84.7 108 51.9
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.7e-12 77.0 58 62.1
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.1e-07 61.6 45 66.7
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.1e-07 61.6 45 66.7
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.1e-07 61.6 45 66.7
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 2.7e-07 61.2 58 62.1
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 4.6e-07 60.5 38 68.4
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 4.6e-07 60.5 38 68.4
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 4.6e-07 60.5 38 68.4
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 4.6e-07 60.5 38 68.4
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.7e-06 58.5 54 48.1


User provided reference genes

Program Settings