Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 2.2e-205 718.8 367 100.0
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 4.1e-95 352.4 212 87.3
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 8.8e-82 308.1 216 75.5
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 7.5e-81 305.1 250 66.4
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.9e-76 290.4 219 70.3
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.4e-74 284.3 211 70.6
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.2e-73 281.2 212 68.9
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 2.0e-73 280.4 216 69.4
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 2.6e-73 280.0 214 67.3
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 7.5e-73 278.5 215 67.4
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 9.8e-73 278.1 212 67.5
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 1.3e-72 277.7 215 68.4
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.7e-72 277.3 214 69.6
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.2e-72 276.9 212 68.4
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 2.2e-72 276.9 212 69.3
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 2.8e-72 276.6 214 69.6
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 3.7e-72 276.2 211 67.8
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 8.3e-72 275.0 217 66.8
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 1.1e-71 274.6 214 68.7
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.4e-71 274.2 212 67.5
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.8e-71 273.9 214 69.2
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.8e-71 273.9 215 66.5
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 2.4e-71 273.5 212 67.0
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 2.4e-71 273.5 212 68.4
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.4e-71 273.5 215 67.9
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 5.4e-71 272.3 214 66.8
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 7.0e-71 271.9 216 65.7
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 9.1e-71 271.6 214 67.3
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 9.1e-71 271.6 212 68.4
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.2e-70 271.2 213 66.2
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 1.2e-70 271.2 214 66.4
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.2e-70 271.2 214 68.2
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.6e-70 270.8 211 66.8
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 1.6e-70 270.8 214 67.3
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 1.6e-70 270.8 214 68.7
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 2.7e-70 270.0 214 68.2
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 3.5e-70 269.6 216 65.7
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.5e-70 269.6 214 67.8
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 3.5e-70 269.6 216 65.7
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 3.5e-70 269.6 214 68.2
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 4.5e-70 269.2 215 66.0
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 7.7e-70 268.5 214 66.8
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 7.7e-70 268.5 216 65.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 7.7e-70 268.5 214 67.8
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 1.0e-69 268.1 216 65.7
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 1.0e-69 268.1 216 65.3
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.0e-69 268.1 215 67.0
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.3e-69 267.7 216 64.4
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.7e-69 267.3 216 65.3
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.7e-69 267.3 213 65.7
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 2.3e-69 266.9 237 62.9
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.9e-69 266.5 216 66.2
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 2.9e-69 266.5 216 65.7
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 3.8e-69 266.2 216 64.8
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 6.5e-69 265.4 225 63.6
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 8.6e-69 265.0 213 65.3
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 8.6e-69 265.0 209 66.5
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 1.1e-68 264.6 216 64.8
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.5e-68 264.2 225 63.1
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.9e-68 263.8 214 64.5
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 2.5e-68 263.5 214 66.4
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 5.5e-68 262.3 216 64.8
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 7.2e-68 261.9 216 64.4
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 7.2e-68 261.9 216 64.4
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 9.5e-68 261.5 215 65.6
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.6e-67 260.8 216 64.4
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 2.8e-67 260.0 207 67.6
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 2.8e-67 260.0 220 62.3
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 2.8e-67 260.0 222 66.7
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 3.6e-67 259.6 213 63.4
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 4.7e-67 259.2 217 65.0
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 6.1e-67 258.8 214 63.1
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 6.1e-67 258.8 216 64.4
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.8e-66 257.3 218 64.2
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 3.0e-66 256.5 226 61.1
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 4.0e-66 256.1 216 63.0
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 8.9e-66 255.0 220 61.8
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 3.4e-65 253.1 214 61.7
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 3.4e-65 253.1 215 63.3
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.4e-65 252.7 236 58.9
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 9.8e-65 251.5 230 60.0
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.3e-64 251.1 207 64.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.2e-64 250.4 214 61.7
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 2.8e-64 250.0 213 62.0
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 2.8e-64 250.0 213 62.0
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 4.1e-63 246.1 230 58.3
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 5.4e-63 245.7 229 57.2
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 5.4e-63 245.7 191 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 2.7e-62 243.4 157 73.2
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 3.5e-62 243.0 241 55.6
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.7e-61 240.7 216 58.8
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 1.7e-61 240.7 216 58.8
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.9e-61 240.0 215 58.6
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 8.6e-61 238.4 205 60.5
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 1.9e-60 237.3 156 73.7
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 7.3e-60 235.3 214 58.9
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.6e-59 234.2 265 52.1
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.6e-59 234.2 220 57.7
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 4.7e-59 232.6 140 77.9
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 8.0e-59 231.9 156 71.2
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 8.0e-59 231.9 227 56.4
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 6.8e-58 228.8 190 69.5
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 8.9e-58 228.4 140 75.7
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 1.3e-56 224.6 184 64.7
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 1.1e-55 221.5 163 66.9
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.2e-51 208.0 243 51.4
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 6.8e-50 202.2 212 53.8
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 4.4e-49 199.5 165 59.4
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.3e-48 198.0 214 53.3
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.2e-48 197.2 214 53.3
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.4e-47 194.5 212 53.8
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 4.1e-47 193.0 201 58.7
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.2e-46 191.4 398 35.4
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 1.6e-46 191.0 219 51.6
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 2.7e-46 190.3 210 52.4
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.2e-43 181.4 213 48.4
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 4.7e-43 179.5 213 50.2
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.4e-39 167.2 106 77.4
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.1e-39 166.4 342 36.3
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.1e-39 166.4 342 36.3
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 6.0e-38 162.5 254 40.9
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.3e-37 161.4 162 55.6
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 4.4e-33 146.4 141 56.0
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 4.4e-33 146.4 89 77.5
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.2e-32 144.1 160 47.5
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 2.1e-27 127.5 123 57.7
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 2.9e-24 117.1 142 41.5
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.3e-21 107.5 70 78.6
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.4e-18 98.2 57 80.7
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.4e-18 98.2 64 73.4
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 6.9e-18 95.9 69 72.5
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.9e-16 90.5 103 51.5
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 2.4e-15 87.4 114 47.4
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 2.3e-13 80.9 47 78.7
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.5e-12 78.2 109 45.9
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 9.6e-12 75.5 65 52.3
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.0e-09 67.8 96 45.8
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 2.6e-09 67.4 114 42.1
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 2.9e-08 63.9 66 53.0
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 6.4e-08 62.8 99 46.5


User provided reference genes

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