Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 5.3e-139 497.7 250 100.0
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 5.8e-85 318.2 193 86.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 2.9e-68 262.7 253 61.7
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 6.4e-68 261.5 197 72.6
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.4e-38 163.3 202 53.0
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.5e-37 160.6 185 50.3
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.3e-28 131.0 199 49.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.9e-27 127.1 183 45.4
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.5e-27 125.6 199 48.2
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 7.2e-27 125.2 186 47.3
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.1e-26 123.6 195 45.6
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.7e-26 123.2 220 45.5
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 4.7e-26 122.5 200 43.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 8.0e-26 121.7 193 45.6
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 8.0e-26 121.7 191 45.5
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.4e-25 120.9 196 43.4
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 1.4e-25 120.9 196 45.9
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 2.3e-25 120.2 206 45.6
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 4.0e-25 119.4 214 43.5
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 5.2e-25 119.0 181 46.4
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 8.8e-25 118.2 194 44.3
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 8.8e-25 118.2 182 45.6
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.2e-24 117.9 189 43.4
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.2e-24 117.9 197 44.7
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-24 117.5 196 43.9
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.0e-24 117.1 185 45.4
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.6e-24 116.7 192 45.3
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 5.7e-24 115.5 190 45.8
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.5e-24 115.2 194 44.8
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 9.7e-24 114.8 196 43.4
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 9.7e-24 114.8 196 45.4
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 9.7e-24 114.8 186 43.5
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 9.7e-24 114.8 207 43.0
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.3e-23 114.4 192 45.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.7e-23 114.0 190 42.1
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.7e-23 114.0 196 42.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.2e-23 113.6 211 44.1
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 2.8e-23 113.2 188 46.3
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 6.3e-23 112.1 191 45.0
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 6.3e-23 112.1 190 43.7
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 8.2e-23 111.7 188 44.7
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.4e-22 110.9 188 44.1
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 7.0e-22 108.6 201 43.8
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 7.0e-22 108.6 201 41.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 9.1e-22 108.2 189 40.2
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 9.1e-22 108.2 191 39.8
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 9.1e-22 108.2 194 41.8
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.2e-21 107.8 190 41.1
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.6e-21 107.5 192 40.6
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.0e-21 107.1 191 41.9
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 2.7e-21 106.7 197 41.6
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.7e-21 106.7 203 41.9
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.7e-21 106.7 201 41.3
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 3.5e-21 106.3 201 40.3
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 4.5e-21 105.9 201 40.3
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 7.7e-21 105.1 186 43.5
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 1.0e-20 104.8 187 42.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 1.7e-20 104.0 197 39.6
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 2.2e-20 103.6 208 38.9
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.0e-20 102.4 183 41.0
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 5.0e-20 102.4 213 39.9
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 6.5e-20 102.1 186 41.9
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 6.5e-20 102.1 184 44.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 8.5e-20 101.7 216 40.3
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.9e-19 100.5 185 42.7
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 2.5e-19 100.1 175 41.7
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.5e-19 100.1 220 39.5
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 2.5e-19 100.1 198 39.4
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 4.2e-19 99.4 190 41.1
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.5e-19 99.0 186 40.9
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 5.5e-19 99.0 213 39.4
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 7.2e-19 98.6 186 40.9
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 9.4e-19 98.2 203 39.9
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 1.2e-18 97.8 190 41.1
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.6e-18 97.4 205 38.0
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.6e-18 97.4 181 42.5
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.6e-18 97.4 212 39.2
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 2.1e-18 97.1 144 46.5
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.1e-18 97.1 217 37.8
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.7e-18 96.7 144 45.8
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.7e-18 96.7 216 39.4
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 3.6e-18 96.3 185 41.1
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 3.6e-18 96.3 185 41.1
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 3.6e-18 96.3 200 37.5
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 3.6e-18 96.3 200 37.5
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.7e-18 95.9 188 39.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 4.7e-18 95.9 220 38.2
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 6.1e-18 95.5 175 41.7
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 6.1e-18 95.5 175 41.7
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 6.1e-18 95.5 205 40.5
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.1e-18 95.5 221 38.9
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 8.0e-18 95.1 159 41.5
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 8.0e-18 95.1 198 38.9
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 8.0e-18 95.1 221 38.9
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 8.0e-18 95.1 182 41.2
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.0e-17 94.7 205 42.0
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.4e-17 94.4 208 38.9
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.4e-17 94.4 226 36.3
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.3e-17 93.6 210 37.1
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 3.0e-17 93.2 204 37.3
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 5.2e-17 92.4 221 35.7
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 6.8e-17 92.0 196 38.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.8e-17 91.7 188 39.4
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 8.8e-17 91.7 188 39.4
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 3.4e-16 89.7 191 37.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 3.4e-16 89.7 185 37.8
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.3e-15 87.8 196 38.3
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 2.2e-15 87.0 207 39.1
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 6.3e-15 85.5 211 38.9
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.4e-14 83.6 155 41.3
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 2.4e-14 83.6 201 36.3
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.1e-14 83.2 202 38.6
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.1e-14 83.2 198 36.4
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.1e-14 83.2 199 35.2
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.1e-14 82.8 197 38.6
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.1e-14 82.8 204 37.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 5.4e-14 82.4 86 58.1
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 5.4e-14 82.4 204 35.3
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 9.1e-14 81.6 196 36.7
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.2e-13 81.3 196 37.2
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.2e-13 81.3 196 32.7
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.6e-13 80.9 116 42.2
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 2.0e-13 80.5 185 37.8
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 2.0e-13 80.5 151 37.7
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 3.5e-13 79.7 168 36.3
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.5e-13 79.7 194 38.1
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.0e-12 78.2 168 36.9
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.3e-12 77.8 210 35.2
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.7e-12 77.4 81 58.0
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.3e-12 77.0 214 33.6
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 6.5e-12 75.5 180 35.6
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.5e-12 75.5 79 54.4
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-11 74.7 82 54.9
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.5e-11 73.6 166 36.7
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 2.5e-11 73.6 81 54.3
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.2e-11 73.2 196 34.2
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 9.5e-11 71.6 164 34.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.1e-10 70.5 80 52.5
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.8e-10 70.1 121 41.3
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.6e-10 69.7 195 35.9
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 4.7e-10 69.3 199 33.2
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.3e-09 67.0 187 33.2
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.0e-09 66.2 214 32.2
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 4.0e-09 66.2 199 32.7
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.5e-08 64.3 196 29.6
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 2.0e-08 63.9 61 54.1
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 4.4e-08 62.8 155 39.4
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 1.3e-07 61.2 45 62.2
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 3.7e-07 59.7 74 47.3
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 4.1e-06 56.2 207 32.9
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 7.0e-06 55.5 58 51.7


User provided reference genes

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