Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0049400 Salix brachista HOM05D001733 ORTHO05D349989 5.3e-47 190.7 95 100.0
Potri.017G144700 Populus trichocarpa HOM05D001733 ORTHO05D001882 8.3e-08 60.5 40 65.0
PGR042G3423 Punica granatum HOM05D001733 ORTHO05D001882 1.1e-07 60.1 40 62.5
Sabra04G0049200 Salix brachista HOM05D001733 ORTHO05D001882 1.1e-07 60.1 40 65.0
Sabra15G0083200 Salix brachista HOM05D001733 ORTHO05D001882 1.1e-07 60.1 40 65.0
Sabra17G0121200 Salix brachista HOM05D001733 ORTHO05D001882 1.1e-07 60.1 40 65.0
Gohir.D08G048800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.1e-07 58.5 40 60.0
Gorai.004G048300 Gossypium raimondii HOM05D001733 ORTHO05D001882 3.1e-07 58.5 40 60.0
TWI77G0925 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.1e-07 58.5 40 62.5
Potri.004G074400 Populus trichocarpa HOM05D001733 ORTHO05D001882 4.1e-07 58.2 40 62.5
QL02p064794 Quercus lobata HOM05D001733 ORTHO05D001882 5.4e-07 57.8 40 60.0
CiPaw.03G076600 Carya illinoinensis HOM05D001733 ORTHO05D001882 7.0e-07 57.4 108 36.1
Lsat_1_v5_gn_3_67140 Lactuca sativa HOM05D001733 ORTHO05D001882 7.0e-07 57.4 40 60.0
Os09g0553200 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 7.0e-07 57.4 40 60.0
Sed0007038 Sechium edule HOM05D001733 ORTHO05D001882 7.0e-07 57.4 40 60.0
HPP92_003187 Vanilla planifolia HOM05D001733 ORTHO05D001882 7.0e-07 57.4 40 60.0
Zm00001eb104400 Zea mays HOM05D001733 ORTHO05D001882 7.0e-07 57.4 40 60.0
Zm00001eb320800 Zea mays HOM05D001733 ORTHO05D001882 7.0e-07 57.4 40 60.0
CDE04G1424 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 60.0
MELO3C020244.2 Cucumis melo HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 60.0
CsaV3_3G021110 Cucumis sativus L. HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 60.0
Gohir.A08G038600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 57.5
HanXRQChr15g0482381 Helianthus annuus HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 60.0
Manes.02G080600 Manihot esculenta HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 60.0
Sed0017083 Sechium edule HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 60.0
vmacro18513 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 9.2e-07 57.0 40 60.0
AL3G12860 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 1.2e-06 56.6 43 55.8
ECA246G3382 Erigeron canadensis HOM05D001733 ORTHO05D001882 1.2e-06 56.6 40 60.0
HanXRQChr16g0532261 Helianthus annuus HOM05D001733 ORTHO05D001882 1.2e-06 56.6 40 60.0
Hund06872 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.2e-06 56.6 40 57.5
TPR.G18898 Trifolium pratense HOM05D001733 ORTHO05D001882 1.2e-06 56.6 40 60.0
Thhalv10020665m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 1.6e-06 56.2 40 57.5
Peaxi162Scf00990g00128 Petunia axillaris HOM05D001733 ORTHO05D001882 1.6e-06 56.2 40 60.0
Atru.chr1.2162 Acer truncatum HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Aa31LG11G12370 Aethionema arabicum HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
AL6G28390 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
MSTRG.3676 Avicennia marina HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
BcaC05g30312 Brassica carinata HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
A03p08270 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
A05p43950 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
A06p26340 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
BNapus_Darmor_BZH_scaffold_162p00100 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
BNapus_Darmor_BZH_scaffold_78p00090 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
BolC5t35024H Brassica oleracea HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
BraA01t04586Z Brassica rapa HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
BraA03t10147Z Brassica rapa HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
BraA05t23131Z Brassica rapa HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Carub.0003s0240 Capsella rubella HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Carub.0006s1550 Capsella rubella HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Thhalv10013449m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Sp3g02280 Schrenkiella parvula HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Sp6g26920 Schrenkiella parvula HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Solyc05g054060.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
THA.LOC104820859 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 2.0e-06 55.8 40 57.5
Actinidia17167 Actinidia chinensis HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Actinidia40419 Actinidia chinensis HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Aqoxy340s001 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Aqoxy3G04124 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
CSS0033291 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
CSS0043880 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Dinv28238 Davidia involucrata HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Manes.01G123000 Manihot esculenta HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Nn3g18506 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Oeu012522.2 Olea europaea HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 60.0
Rhsim10G0185000 Rhododendron simsii HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
SalBow5G0948 Salvia bowleyana HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
SalBow5G5318 Salvia bowleyana HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
TAR622G0535 Trochodendron aralioides HOM05D001733 ORTHO05D001882 2.7e-06 55.5 40 57.5
Actinidia28784 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
CAN.G449.11 Capsicum annuum HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
CDE02G0713 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
Gohir.A11G169600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
Gohir.D11G175800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
Gorai.007G188400 Gossypium raimondii HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
PSO063G7403 Papaver somniferum HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
PSO782G3656 Papaver somniferum HOM05D001733 ORTHO05D001882 3.5e-06 55.1 40 57.5
C03p09620 Brassica napus HOM05D001733 ORTHO05D001882 4.5e-06 54.7 40 55.0
CANSAT54G2999 Cannabis sativa HOM05D001733 ORTHO05D001882 4.5e-06 54.7 40 57.5
CiPaw.04G049000 Carya illinoinensis HOM05D001733 ORTHO05D001882 4.5e-06 54.7 40 57.5
Ciclev10011657m.g Citrus clementina HOM05D001733 ORTHO05D001882 4.5e-06 54.7 40 57.5
MD09G1278300 Malus domestica HOM05D001733 ORTHO05D001882 4.5e-06 54.7 40 60.0
Sopen05g032550 Solanum pennellii HOM05D001733 ORTHO05D001882 4.5e-06 54.7 40 57.5
PGSC0003DMG401013333 Solanum tuberosum HOM05D001733 ORTHO05D001882 4.5e-06 54.7 43 55.8
TWI53G0883 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 4.5e-06 54.7 40 57.5
ATR0807G128 Amborella trichopoda HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 57.5
BcaC09g47739 Brassica carinata HOM05D001733 ORTHO05D001882 5.9e-06 54.3 36 63.9
CARHR077270 Cardamine hirsuta HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 55.0
Cfa007757 Carpinus fangiana HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 57.5
Cc07_g12830 Coffea canephora HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 57.5
Haze_14315 Corylus avellana HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 57.5
Eucgr.F02905 Eucalyptus grandis HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 57.5
FAN28G2921 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.9e-06 54.3 83 43.4
Nitab4.5_0000143g0530 Nicotiana tabacum HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 57.5
Nitab4.5_0001198g0330 Nicotiana tabacum HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 57.5
Potri.004G074750 Populus trichocarpa HOM05D001733 ORTHO05D001882 5.9e-06 54.3 126 36.5
THA.LOC104802909 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 5.9e-06 54.3 40 55.0
Ah.04g163000 Amaranthus hybridus HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 55.0
AT3G03250 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 55.0
EL10Ac4g08931 Beta vulgaris HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 55.0
BcaC05g29872 Brassica carinata HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 55.0
CAN.G1186.7 Capsicum annuum HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 57.5
ClCG05G011350 Citrullus lanatus HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 57.5
Glyma.11G210989 Glycine max HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 57.5
Hund22202 Selenicereus undatus HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 55.0
Sc20g0000780 Simmondsia chinensis HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 55.0
Solyc11g011960.2 Solanum lycopersicum HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 57.5
Sopen11g006770 Solanum pennellii HOM05D001733 ORTHO05D001882 7.8e-06 53.9 40 57.5


User provided reference genes

Program Settings