Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.0e-186 655.6 320 100.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.7e-159 565.5 320 88.4
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 8.6e-142 507.3 305 82.0
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 3.8e-121 438.7 316 69.9
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 5.1e-110 401.7 324 64.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.9e-109 399.8 326 60.4
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 7.4e-109 397.9 315 63.8
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 2.1e-108 396.4 320 60.9
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.8e-107 393.3 324 60.5
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 6.9e-107 391.3 323 62.8
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.9e-107 391.3 322 60.2
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.2e-106 390.6 318 61.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.5e-106 390.2 323 60.4
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.0e-106 389.8 324 60.2
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-106 389.8 320 62.2
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 2.6e-106 389.4 321 60.7
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.6e-106 389.4 320 62.2
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.4e-106 389.0 307 64.2
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-106 388.7 320 62.2
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.0e-105 387.5 284 65.8
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 3.8e-105 385.6 329 59.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 8.4e-105 384.4 316 61.1
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.9e-104 383.3 341 58.9
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.2e-104 382.5 296 61.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 3.2e-104 382.5 321 60.1
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.0e-102 377.5 296 60.5
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.0e-102 377.5 321 60.1
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.0e-102 377.5 304 65.8
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.8e-102 376.7 296 60.5
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 3.9e-102 375.6 278 65.5
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.7e-102 374.8 330 58.5
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.7e-102 374.4 330 58.2
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.3e-101 372.5 331 58.9
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 4.3e-101 372.1 358 54.7
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 7.4e-101 371.3 316 57.9
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.3e-100 370.5 321 58.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.6e-100 370.2 312 59.0
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.1e-100 369.8 315 58.4
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 3.7e-100 369.0 324 58.6
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 4.1e-99 365.5 323 58.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.2e-98 364.0 310 58.7
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 2.0e-98 363.2 312 58.3
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 4.5e-98 362.1 325 56.0
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.3e-97 360.5 305 59.7
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.7e-97 360.1 326 57.1
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 5.0e-97 358.6 302 61.9
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 6.5e-97 358.2 278 63.3
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 8.5e-97 357.8 304 57.9
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 8.5e-97 357.8 322 57.5
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.1e-96 357.5 323 59.8
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-96 357.1 289 62.3
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.9e-96 356.7 310 57.4
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.2e-96 355.9 323 57.0
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.2e-96 355.9 312 57.4
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 7.2e-96 354.8 319 59.2
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.6e-95 353.6 326 56.1
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.6e-95 353.6 383 51.4
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.1e-95 353.2 326 55.2
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.1e-95 353.2 318 56.0
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.6e-95 352.4 305 60.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 7.9e-95 351.3 290 61.4
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 7.9e-95 351.3 312 56.7
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.3e-94 350.5 320 56.6
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 2.3e-94 349.7 288 60.4
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.3e-94 349.7 357 52.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.0e-94 349.4 320 55.0
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 3.0e-94 349.4 291 59.1
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.1e-94 348.6 318 58.8
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 6.7e-94 348.2 234 71.4
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.1e-93 347.4 317 56.5
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 3.3e-93 345.9 320 55.9
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.3e-93 345.9 292 58.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.3e-93 345.5 319 57.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 7.4e-93 344.7 385 50.4
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.3e-92 344.0 322 54.0
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.2e-92 343.2 318 56.0
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 6.3e-92 341.7 281 59.1
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 8.2e-92 341.3 314 57.6
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.1e-91 340.9 322 53.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.1e-91 340.9 321 55.8
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.1e-91 340.9 321 55.8
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 2.4e-91 339.7 339 53.1
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.1e-91 339.3 283 58.7
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 4.1e-91 339.0 327 55.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 4.1e-91 339.0 279 59.5
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 9.1e-91 337.8 336 53.6
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.3e-89 334.0 288 58.7
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.7e-89 333.6 313 54.6
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.7e-89 333.6 275 60.0
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.2e-89 333.2 254 62.6
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 6.5e-89 331.6 278 57.2
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.1e-88 330.9 285 56.1
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.4e-88 330.5 286 57.3
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.4e-88 330.5 289 57.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.4e-88 330.5 275 60.4
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.9e-88 330.1 327 52.9
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 3.2e-88 329.3 285 58.2
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.1e-87 326.6 370 50.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 4.6e-87 325.5 300 56.0
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.1e-85 320.9 286 56.6
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.0e-85 320.1 326 55.5
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 3.3e-85 319.3 287 56.1
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 4.4e-85 318.9 296 57.1
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 4.4e-85 318.9 284 57.4
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.3e-84 317.4 306 51.3
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.8e-84 315.5 319 54.9
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.5e-82 310.5 212 71.2
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 8.5e-81 304.7 264 57.2
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.1e-80 304.3 250 58.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.5e-80 303.1 320 53.1
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.7e-79 299.7 305 53.1
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.0e-78 296.2 366 46.2
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.3e-76 288.5 254 54.3
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-75 287.3 231 61.0
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 6.5e-73 278.5 288 49.7
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.5e-72 277.3 235 57.9
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.4e-70 270.8 298 51.3
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 4.8e-68 262.3 241 56.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.1e-67 259.6 235 54.0
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.5e-66 256.1 269 50.6
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.5e-65 251.5 218 57.3
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-64 251.1 207 60.4
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.2e-64 248.4 200 64.5
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.6e-61 240.0 246 48.4
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.1e-59 234.6 152 69.7
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.0e-58 230.3 197 59.9
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.2e-55 221.1 140 72.1
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.1e-55 220.3 246 45.9
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.1e-55 220.3 246 45.9
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.6e-53 213.4 161 65.2
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 9.8e-53 211.5 162 63.6
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.7e-52 210.7 274 40.5
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 9.2e-51 204.9 171 57.9
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.7e-50 203.4 218 51.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-44 184.5 208 49.5
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.7e-44 184.1 116 70.7
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.1e-43 181.4 198 50.0
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.2e-42 177.9 246 39.4
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 9.8e-37 158.3 195 45.1
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 9.8e-37 158.3 314 35.7
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 8.6e-33 145.2 169 50.9
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 6.8e-30 135.6 210 40.0
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.5e-29 134.4 108 55.6
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 2.7e-26 123.6 140 49.3
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.1e-22 111.7 76 67.1
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.4e-22 111.3 141 49.6
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.2e-21 108.2 71 67.6
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.5e-21 107.8 140 47.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.7e-20 104.4 106 48.1
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 9.2e-19 98.6 141 39.0
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.3e-17 94.7 72 58.3
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.5e-16 90.5 73 54.8
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 1.2e-13 81.6 72 58.3
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.1e-09 66.2 125 38.4
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.5e-08 63.9 45 60.0
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 5.6e-08 62.8 36 72.2


User provided reference genes

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