Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 7.1e-292 1006.5 504 100.0
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 1.7e-256 889.0 504 89.9
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 5.3e-146 521.9 511 57.1
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 4.5e-145 518.8 504 56.7
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 2.2e-144 516.5 506 58.3
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 6.7e-141 505.0 504 56.5
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 8.8e-141 504.6 502 54.4
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.5e-140 503.8 520 55.4
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 2.6e-140 503.1 539 52.7
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 9.7e-140 501.1 537 52.3
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 9.7e-140 501.1 503 57.7
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 9.7e-140 501.1 504 56.0
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.7e-139 499.2 503 53.5
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.1e-138 497.7 504 56.5
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 3.1e-138 496.1 538 52.8
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 7.0e-138 495.0 538 52.2
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 2.7e-137 493.0 504 56.7
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 1.3e-136 490.7 508 55.1
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 1.7e-136 490.3 540 51.1
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.2e-136 490.0 508 54.9
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 2.2e-136 490.0 538 51.5
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 3.8e-136 489.2 502 54.8
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 5.0e-136 488.8 502 54.8
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 8.5e-136 488.0 508 54.7
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 1.1e-135 487.6 501 53.7
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.9e-135 486.9 521 54.1
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 3.2e-135 486.1 535 50.8
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 4.2e-135 485.7 534 51.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 2.1e-134 483.4 503 54.9
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.6e-134 482.6 502 54.6
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 3.6e-134 482.6 503 54.7
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.7e-134 482.3 502 54.4
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.0e-133 481.1 501 52.3
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 1.8e-133 480.3 510 51.8
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 3.0e-133 479.6 534 50.9
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 3.0e-133 479.6 501 52.1
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 2.6e-132 476.5 504 53.2
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 3.7e-131 472.6 533 52.3
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 1.4e-130 470.7 503 55.3
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 7.0e-130 468.4 516 51.2
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 4.0e-125 452.6 507 51.1
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 5.2e-125 452.2 507 50.7
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.8e-125 451.4 520 49.0
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 2.6e-124 449.9 503 50.9
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.3e-123 447.6 506 49.8
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 2.2e-123 446.8 505 50.1
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 8.3e-123 444.9 506 52.2
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 2.4e-122 443.4 499 50.5
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 9.2e-122 441.4 506 50.2
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 2.0e-121 440.3 503 49.1
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 3.5e-121 439.5 504 49.4
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 4.5e-121 439.1 504 50.4
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.7e-120 437.2 512 49.4
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 6.6e-120 435.3 506 49.6
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 1.5e-119 434.1 503 49.5
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.9e-119 433.7 506 49.4
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.1e-118 430.3 492 49.8
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 2.8e-118 429.9 503 48.5
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 2.8e-118 429.9 506 49.4
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 6.1e-118 428.7 445 54.2
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.0e-117 427.9 502 48.2
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 2.3e-117 426.8 510 48.4
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 3.0e-117 426.4 547 47.5
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 4.4e-116 422.5 503 47.9
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.3e-115 421.0 506 48.0
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 4.9e-115 419.1 507 45.8
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 2.4e-114 416.8 505 48.1
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.2e-113 414.5 502 47.6
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.6e-113 414.1 513 48.9
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 2.0e-113 413.7 505 48.1
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 1.0e-112 411.4 506 48.8
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 8.6e-112 408.3 520 44.6
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.6e-110 404.1 506 45.8
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 6.2e-110 402.1 514 45.9
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 3.1e-109 399.8 505 45.1
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 3.1e-109 399.8 508 46.7
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 4.0e-109 399.4 515 48.3
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 6.8e-109 398.7 457 48.1
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 4.4e-108 396.0 507 47.5
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 3.7e-107 392.9 407 55.0
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 5.4e-106 389.0 446 49.6
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 6.2e-102 375.6 525 45.9
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 1.2e-100 371.3 415 51.8
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 7.1e-98 362.1 503 45.9
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 1.6e-89 334.3 412 48.1
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 2.1e-89 334.0 506 42.7
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 6.0e-89 332.4 384 50.0
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.5e-87 327.8 350 50.6
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 6.2e-86 322.4 353 52.4
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.1e-82 311.6 503 40.2
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 4.2e-82 309.7 498 37.8
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 3.9e-80 303.1 503 41.2
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 3.5e-73 280.0 501 39.9
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 9.6e-71 271.9 499 38.1
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 6.4e-67 259.2 295 52.2
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 1.4e-66 258.1 238 59.7
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 2.4e-66 257.3 240 57.1
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 2.3e-64 250.8 533 33.8
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-62 245.0 273 49.8
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 2.1e-62 244.2 239 56.1
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 4.8e-62 243.0 371 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 2.1e-57 227.6 581 30.1
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 4.3e-55 219.9 282 48.2
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.4e-53 214.2 224 50.4
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 4.1e-53 213.4 512 30.7
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 4.2e-50 203.4 274 44.5
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 1.9e-47 194.5 151 67.5
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 5.7e-47 193.0 529 27.8
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 9.7e-39 165.6 151 58.9
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 2.0e-31 141.4 198 38.9
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 5.9e-28 129.8 92 68.5
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 7.7e-28 129.4 74 85.1
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.8e-24 118.2 144 45.8
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 5.2e-24 116.7 69 79.7
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 8.0e-17 92.8 135 37.8
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.0e-16 92.4 124 41.9
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 9.8e-15 85.9 61 72.1
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 6.3e-14 83.2 91 51.6
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.7e-12 77.8 55 69.1
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 6.8e-08 63.2 48 62.5
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 9.8e-07 59.3 71 47.9


User provided reference genes

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