Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 1.3e-151 539.7 270 100.0
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 1.5e-115 419.9 275 78.2
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 4.1e-52 209.1 276 50.7
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 2.2e-45 186.8 280 45.0
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 6.6e-42 175.3 280 44.3
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 3.5e-35 152.9 255 43.9
Gohir.D06G142700 Gossypium hirsutum HOM05D008587 ORTHO05D010485 1.7e-34 150.6 285 41.1
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 8.6e-34 148.3 269 37.2
Gohir.A06G137500 Gossypium hirsutum HOM05D008587 ORTHO05D010485 1.1e-33 147.9 282 40.1
Gorai.010G166500 Gossypium raimondii HOM05D008587 ORTHO05D010485 1.9e-33 147.1 284 40.5
COL.COLO4_31072 Corchorus olitorius HOM05D008587 ORTHO05D010485 1.2e-32 144.4 280 39.3
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 3.6e-32 142.9 277 39.0
TWI73G0974 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 3.6e-32 142.9 278 38.5
Duzib235G1124 Durio zibethinus HOM05D008587 ORTHO05D010485 1.4e-31 141.0 317 36.3
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 1.8e-31 140.6 286 39.5
Thecc.06G150600 Theobroma cacao HOM05D008587 ORTHO05D010485 8.9e-31 138.3 285 37.5
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 2.9e-29 133.3 281 35.6
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.4e-28 131.0 282 36.9
Haze_05596 Corylus avellana HOM05D008587 ORTHO05D010485 2.8e-24 116.7 288 38.2
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 6.2e-24 115.5 237 36.3
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 6.2e-24 115.5 234 39.3
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 6.2e-24 115.5 237 36.3
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 6.2e-24 115.5 237 36.3
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 6.2e-24 115.5 234 39.3
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 4.0e-23 112.8 236 37.3
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 6.8e-23 112.1 275 36.0
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 1.2e-22 111.3 207 41.5
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 1.5e-22 110.9 221 38.9
RcHm_v2.0_Chr5g0014151 Rosa chinensis HOM05D014465 ORTHO05D010485 2.0e-22 110.5 289 33.9
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 3.4e-22 109.8 238 36.6
Cfa000945 Carpinus fangiana HOM05D008587 ORTHO05D010485 4.4e-22 109.4 287 35.2
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 4.4e-22 109.4 281 32.4
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 7.5e-22 108.6 245 38.0
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 9.8e-22 108.2 264 36.7
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 2.2e-21 107.1 262 36.3
RcHm_v2.0_Chr5g0014161 Rosa chinensis HOM05D014465 ORTHO05D010485 2.9e-21 106.7 262 34.4
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 6.4e-21 105.5 290 33.8
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 2.4e-20 103.6 283 33.2
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 4.1e-20 102.8 292 34.6
FvH4_3g05550 Fragaria vesca HOM05D014465 ORTHO05D010485 2.7e-19 100.1 283 33.6
FvH4_3g05540 Fragaria vesca HOM05D014465 ORTHO05D010485 1.1e-17 94.7 288 33.3
Haze_05597 Corylus avellana HOM05D008587 ORTHO05D010485 1.5e-17 94.4 276 36.2
FAN16G1026 Fragaria x ananassa HOM05D014465 ORTHO05D010485 2.1e-16 90.5 289 32.2
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 1.8e-15 87.4 247 32.8
Cfa000943 Carpinus fangiana HOM05D008587 ORTHO05D010485 7.6e-14 82.0 147 36.7
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 5.4e-12 75.9 147 35.4
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 7.1e-12 75.5 140 36.4
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 9.2e-12 75.1 103 36.9
CiPaw.09G123600 Carya illinoinensis HOM05D008587 ORTHO05D010485 1.2e-11 74.7 214 33.2
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 1.2e-11 74.7 105 41.9
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 1.0e-10 71.6 109 38.5
FAN25G0862 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.3e-10 71.2 316 27.2
FAN25G2871 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.3e-10 71.2 316 27.2
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 1.7e-10 70.9 150 35.3
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 3.9e-10 69.7 148 33.1
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 3.9e-10 69.7 142 35.2
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 3.9e-10 69.7 143 34.3
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 5.1e-10 69.3 99 41.4
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 5.1e-10 69.3 97 42.3
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 8.6e-10 68.6 139 36.7
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 8.6e-10 68.6 108 36.1
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.1e-09 68.2 104 38.5
Lalb_Chr07g0188571 Lupinus albus HOM05D018405 ORTHO05D010485 1.5e-09 67.8 246 26.4
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 1.9e-09 67.4 140 34.3
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 2.5e-09 67.0 140 34.3
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 3.3e-09 66.6 149 31.5
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 4.3e-09 66.2 140 34.3
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 4.3e-09 66.2 101 39.6
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 9.6e-09 65.1 140 33.6
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 1.2e-08 64.7 97 43.3
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 1.6e-08 64.3 100 39.0
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.6e-08 64.3 143 33.6
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 1.6e-08 64.3 141 36.2
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 1.6e-08 64.3 86 40.7
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 2.1e-08 63.9 100 39.0
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 2.1e-08 63.9 137 33.6
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 2.1e-08 63.9 105 39.0
MELO3C035710.2 Cucumis melo HOM05D030426 ORTHO05D029164 2.8e-08 63.5 148 30.4
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 2.8e-08 63.5 146 33.6
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 4.7e-08 62.8 116 33.6
CsaV3_1G032450 Cucumis sativus L. HOM05D030426 ORTHO05D029164 4.7e-08 62.8 148 31.1
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 8.1e-08 62.0 107 34.6
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 8.1e-08 62.0 206 30.1
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 1.1e-07 61.6 133 30.8
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 1.4e-07 61.2 167 30.5
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 1.8e-07 60.8 89 36.0
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 2.4e-07 60.5 105 36.2
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 3.1e-07 60.1 209 27.8
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 3.1e-07 60.1 146 32.2
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 8.9e-07 58.5 124 35.5
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 1.2e-06 58.2 124 33.9
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 2.0e-06 57.4 201 28.9
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 2.0e-06 57.4 123 34.1
GSVIVG01021457001 Vitis vinifera HOM05D008587 ORTHO05D051630 2.0e-06 57.4 186 26.3
arahy.Tifrunner.gnm1.ann1.9ZW3TV Arachis hypogaea HOM05D054726 ORTHO05D019811 3.4e-06 56.6 223 25.1
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 3.4e-06 56.6 124 33.9
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 3.4e-06 56.6 124 33.9
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 4.4e-06 56.2 108 36.1
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 5.8e-06 55.8 103 31.1
RcHm_v2.0_Chr5g0014111 Rosa chinensis HOM05D007839 ORTHO05D009924 5.8e-06 55.8 154 31.8
PGSC0003DMG400021096 Solanum tuberosum HOM05D007839 ORTHO05D009924 5.8e-06 55.8 119 35.3
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 5.8e-06 55.8 110 32.7
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 7.6e-06 55.5 108 32.4
Sabra11G0067200 Salix brachista HOM05D007839 ORTHO05D009924 7.6e-06 55.5 124 33.9


User provided reference genes

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