Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.6e-50 200.7 104 100.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.2e-38 162.2 106 82.1
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 7.9e-28 127.1 105 68.6
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 6.7e-27 124.0 104 65.4
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 7.4e-26 120.6 104 65.4
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 2.4e-24 115.5 104 65.4
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 3.4e-23 111.7 104 65.4
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 3.8e-22 108.2 105 61.0
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 6.5e-22 107.5 100 64.0
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 5.5e-21 104.4 105 61.9
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.2e-20 103.2 106 59.4
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.1e-20 100.9 106 58.5
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.1e-20 100.9 106 58.5
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 8.7e-19 97.1 104 53.8
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 1.1e-18 96.7 105 55.2
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.5e-18 95.5 107 56.1
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 3.3e-18 95.1 105 56.2
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.3e-18 94.7 104 55.8
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 5.7e-18 94.4 107 57.9
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.4e-18 94.0 107 54.2
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.4e-18 94.0 107 54.2
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.4e-18 94.0 107 54.2
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 7.4e-18 94.0 104 51.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 9.7e-18 93.6 106 55.7
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 9.7e-18 93.6 106 55.7
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.3e-17 93.2 104 54.8
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.3e-17 93.2 105 55.2
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.3e-17 93.2 105 54.3
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.6e-17 92.8 105 51.4
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.2e-17 92.4 107 57.9
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.8e-17 91.3 105 50.5
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.3e-17 90.9 107 57.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.4e-16 89.7 105 51.4
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 1.8e-16 89.4 68 69.1
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.8e-16 89.4 106 54.7
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.8e-16 89.4 105 52.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 2.4e-16 89.0 106 52.8
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 4.1e-16 88.2 105 53.3
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 5.3e-16 87.8 105 49.5
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.3e-16 87.8 104 51.9
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 6.9e-16 87.4 105 51.4
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.2e-15 86.7 97 50.5
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.0e-15 85.9 98 49.0
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.0e-15 85.9 109 50.5
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.6e-15 85.5 104 51.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 3.4e-15 85.1 104 45.2
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 3.4e-15 85.1 98 50.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 4.5e-15 84.7 53 73.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 4.5e-15 84.7 95 49.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.9e-15 84.3 104 49.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 7.7e-15 84.0 99 48.5
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.3e-14 83.2 105 50.5
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 1.7e-14 82.8 107 48.6
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.7e-14 82.8 100 49.0
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.7e-14 82.8 105 50.5
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.2e-14 82.4 105 50.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.9e-14 82.0 98 49.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 3.8e-14 81.6 54 70.4
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 3.8e-14 81.6 98 49.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 3.8e-14 81.6 104 44.2
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 5.0e-14 81.3 105 50.5
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 5.0e-14 81.3 104 48.1
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 6.5e-14 80.9 106 49.1
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 8.5e-14 80.5 107 50.5
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.1e-13 80.1 101 50.5
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.9e-13 79.3 104 49.0
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.2e-13 78.6 106 46.2
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 3.2e-13 78.6 99 46.5
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 3.2e-13 78.6 105 49.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.2e-13 78.6 53 67.9
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.2e-13 78.2 107 43.0
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 4.2e-13 78.2 53 69.8
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 5.5e-13 77.8 106 43.4
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.2e-12 76.6 56 66.1
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.7e-12 75.5 96 44.8
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.7e-12 75.5 98 51.0
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 3.6e-12 75.1 105 44.8
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.0e-11 73.6 98 43.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.4e-11 73.2 50 64.0
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.8e-11 72.8 63 66.7
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 2.3e-11 72.4 50 66.0
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.0e-11 72.0 50 64.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 3.0e-11 72.0 105 44.8
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 3.9e-11 71.6 98 43.9
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 5.1e-11 71.2 54 66.7
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-10 70.1 50 60.0
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-10 69.7 50 60.0
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.5e-10 69.7 50 60.0
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 1.5e-10 69.7 104 43.3
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 2.0e-10 69.3 63 58.7
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.0e-10 69.3 98 40.8
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.0e-10 69.3 50 60.0
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 2.0e-10 69.3 87 48.3
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 2.5e-10 68.9 96 38.5
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 2.5e-10 68.9 96 38.5
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 2.5e-10 68.9 96 38.5
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 2.5e-10 68.9 95 46.3
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 4.3e-10 68.2 105 44.8
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.3e-10 68.2 53 60.4
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 4.3e-10 68.2 106 45.3
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 4.3e-10 68.2 98 38.8
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 5.7e-10 67.8 98 38.8
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 7.4e-10 67.4 96 36.5
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 7.4e-10 67.4 96 36.5
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 7.4e-10 67.4 53 66.0
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 9.7e-10 67.0 101 45.5
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 9.7e-10 67.0 99 43.4
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.7e-09 66.2 110 40.0
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 2.2e-09 65.9 94 43.6
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.2e-09 65.9 54 61.1
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.8e-09 65.5 51 58.8
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.8e-09 65.5 51 58.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.8e-09 65.5 51 58.8
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 2.8e-09 65.5 53 64.2
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 3.7e-09 65.1 104 39.4
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 4.8e-09 64.7 53 56.6
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 8.2e-09 63.9 50 56.0
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 8.2e-09 63.9 50 56.0
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 8.2e-09 63.9 50 56.0
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.2e-09 63.9 94 39.4
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 1.1e-08 63.5 51 58.8
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.1e-08 63.5 104 40.4
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 1.8e-08 62.8 103 36.9
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.4e-08 62.4 52 57.7
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.1e-08 62.0 94 44.7
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 4.1e-08 61.6 103 37.9
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 4.1e-08 61.6 103 37.9
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.3e-08 61.2 105 41.0
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 5.3e-08 61.2 52 53.8
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 6.9e-08 60.8 104 40.4
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 9.1e-08 60.5 57 54.4
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 1.5e-07 59.7 50 54.0
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 1.5e-07 59.7 53 60.4
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 1.5e-07 59.7 103 35.9
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 2.0e-07 59.3 57 54.4
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 2.0e-07 59.3 57 54.4
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 2.0e-07 59.3 96 41.7
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 2.0e-07 59.3 56 53.6
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.6e-07 58.9 105 41.0
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 2.6e-07 58.9 105 41.0
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 3.4e-07 58.5 57 52.6
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 5.9e-07 57.8 57 52.6
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 5.9e-07 57.8 49 57.1
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 5.9e-07 57.8 94 40.4
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.0e-06 57.0 53 58.5
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 1.0e-06 57.0 105 41.0
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.2e-06 55.8 105 39.0
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 2.9e-06 55.5 106 44.3
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 3.8e-06 55.1 55 52.7
Carub.0001s1668 Capsella rubella HOM05D009829 ORTHO05D012418 3.8e-06 55.1 60 50.0
CARHR017460 Cardamine hirsuta HOM05D009829 ORTHO05D012418 3.8e-06 55.1 55 58.2
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 3.8e-06 55.1 76 51.3
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 3.8e-06 55.1 56 51.8
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 5.0e-06 54.7 55 52.7
MELO3C035718.2 Cucumis melo HOM05D005059 ORTHO05D004248 5.0e-06 54.7 83 42.2
unitig_744.g24543 Utricularia gibba HOM05D005059 ORTHO05D004248 5.0e-06 54.7 99 37.4
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 8.5e-06 53.9 56 57.1
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.5e-06 53.9 104 38.5
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.5e-06 53.9 104 38.5
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.5e-06 53.9 104 39.4


User provided reference genes

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