Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0036000 Salix brachista HOM05D023908 ORTHO05D002944 8.0e-166 587.0 300 100.0
Potri.004G055300 Populus trichocarpa HOM05D023908 ORTHO05D002944 1.5e-135 486.5 315 82.2
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 1.3e-99 367.1 315 66.3
Manes.17G054601 Manihot esculenta HOM05D023908 ORTHO05D002944 8.9e-24 115.2 250 36.4
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.1e-16 91.7 147 37.4
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 4.5e-15 86.3 246 30.9
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 3.8e-14 83.2 334 29.9
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 3.8e-14 83.2 243 30.9
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 8.4e-14 82.0 301 26.9
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 1.9e-13 80.9 307 26.4
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 7.1e-13 79.0 303 26.4
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 9.3e-13 78.6 301 26.6
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.7e-12 77.0 291 26.1
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 7.9e-12 75.5 241 28.2
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 7.9e-12 75.5 85 44.7
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 3.0e-11 73.6 121 34.7
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 5.1e-11 72.8 244 28.7
CSS0022523 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 7.4e-10 68.9 244 27.5
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 2.1e-09 67.4 83 41.0
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 4.8e-09 66.2 87 40.2
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 4.8e-09 66.2 98 35.7
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 4.8e-09 66.2 83 39.8
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 4.8e-09 66.2 83 39.8
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 6.2e-09 65.9 83 39.8
QL05p046502 Quercus lobata HOM05D016724 ORTHO05D017903 6.2e-09 65.9 360 26.1
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 8.1e-09 65.5 89 38.2
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 8.1e-09 65.5 89 38.2
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 8.1e-09 65.5 89 38.2
Rhsim13G0191200 Rhododendron simsii HOM05D014353 ORTHO05D002944 8.1e-09 65.5 367 23.7
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.4e-08 64.7 54 50.0
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 1.4e-08 64.7 54 50.0
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.4e-08 64.7 83 41.0
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.8e-08 64.3 83 42.2
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 1.8e-08 64.3 83 42.2
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 1.8e-08 64.3 83 42.2
Atru.chr10.1682 Acer truncatum HOM05D023908 ORTHO05D002944 2.4e-08 63.9 312 24.7
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 2.4e-08 63.9 89 39.3
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 2.4e-08 63.9 71 43.7
Nitab4.5_0009762g0030 Nicotiana tabacum HOM05D014572 ORTHO05D016880 2.4e-08 63.9 347 24.5
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 4.0e-08 63.2 174 28.7
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 4.0e-08 63.2 90 33.3
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 5.3e-08 62.8 62 45.2
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 5.3e-08 62.8 83 39.8
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 6.9e-08 62.4 70 41.4
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 9.0e-08 62.0 66 39.4
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 9.0e-08 62.0 60 43.3
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 9.0e-08 62.0 60 43.3
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 9.0e-08 62.0 83 39.8
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 9.0e-08 62.0 240 25.4
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 9.0e-08 62.0 266 27.4
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 9.0e-08 62.0 81 34.6
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 1.2e-07 61.6 58 43.1
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 1.2e-07 61.6 75 41.3
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 1.2e-07 61.6 70 40.0
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.2e-07 61.6 65 43.1
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 1.2e-07 61.6 283 23.0
TWI38G0720 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 1.2e-07 61.6 340 25.0
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 1.5e-07 61.2 58 43.1
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 1.5e-07 61.2 54 44.4
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 1.5e-07 61.2 54 44.4
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 1.5e-07 61.2 67 40.3
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 2.0e-07 60.8 89 34.8
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 2.0e-07 60.8 70 40.0
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.0e-07 60.8 91 30.8
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 2.6e-07 60.5 114 30.7
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 2.6e-07 60.5 53 49.1
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 2.6e-07 60.5 54 44.4
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 3.4e-07 60.1 54 44.4
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 3.4e-07 60.1 53 49.1
BolC3t14433H Brassica oleracea HOM05D004563 ORTHO05D002944 3.4e-07 60.1 52 50.0
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 3.4e-07 60.1 53 49.1
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.4e-07 60.1 83 38.6
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 4.5e-07 59.7 128 28.9
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 4.5e-07 59.7 62 41.9
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 5.8e-07 59.3 62 41.9
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 5.8e-07 59.3 81 30.9
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 5.8e-07 59.3 60 41.7
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 7.6e-07 58.9 54 44.4
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 7.6e-07 58.9 52 44.2
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 7.6e-07 58.9 83 37.3
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 7.6e-07 58.9 81 33.3
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 1.3e-06 58.2 52 44.2
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 1.3e-06 58.2 65 36.9
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 1.3e-06 58.2 65 41.5
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.7e-06 57.8 66 39.4
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 1.7e-06 57.8 52 46.2
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 1.7e-06 57.8 52 46.2
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.7e-06 57.8 60 40.0
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 1.7e-06 57.8 76 36.8
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 1.7e-06 57.8 76 36.8
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 1.7e-06 57.8 54 44.4
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 1.7e-06 57.8 94 35.1
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 2.2e-06 57.4 94 31.9
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.2e-06 57.4 94 31.9
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.2e-06 57.4 91 30.8
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.2e-06 57.4 83 36.1
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 2.2e-06 57.4 83 36.1
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.9e-06 57.0 131 31.3
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 2.9e-06 57.0 93 33.3
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 2.9e-06 57.0 229 28.8
Nitab4.5_0003322g0040 Nicotiana tabacum HOM05D014572 ORTHO05D016880 2.9e-06 57.0 356 23.0
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 2.9e-06 57.0 261 22.6
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.8e-06 56.6 54 44.4
AUR62038920 Chenopodium quinoa HOM05D004563 ORTHO05D002944 3.8e-06 56.6 60 38.3
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.9e-06 56.2 129 31.8
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.9e-06 56.2 52 44.2
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 4.9e-06 56.2 91 30.8
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 4.9e-06 56.2 124 29.0
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 4.9e-06 56.2 92 35.9
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 4.9e-06 56.2 144 27.8
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 6.4e-06 55.8 90 33.3
BcaB06g28496 Brassica carinata HOM05D004563 ORTHO05D002944 6.4e-06 55.8 53 43.4
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 6.4e-06 55.8 131 31.3
AUR62038995 Chenopodium quinoa HOM05D007922 ORTHO05D009490 6.4e-06 55.8 93 32.3
Sc21g0003700 Simmondsia chinensis HOM05D004563 ORTHO05D002944 6.4e-06 55.8 235 24.7
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 6.4e-06 55.8 181 28.7
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 8.4e-06 55.5 136 27.9
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 8.4e-06 55.5 86 33.7
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 8.4e-06 55.5 76 35.5
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 8.4e-06 55.5 65 40.0
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 8.4e-06 55.5 170 30.0
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 8.4e-06 55.5 92 37.0


User provided reference genes

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