Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 5.8e-283 976.9 482 100.0
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 6.3e-104 382.1 474 47.3
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 9.4e-100 368.2 492 45.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.1e-87 326.2 476 41.4
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 1.2e-83 314.7 155 95.5
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 2.9e-72 276.9 155 82.6
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 2.0e-70 270.8 155 80.6
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 3.0e-69 266.9 156 81.4
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.2e-67 261.5 153 80.4
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 2.8e-67 260.4 156 78.8
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 3.6e-67 260.0 155 77.4
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 1.8e-66 257.7 150 79.3
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 2.6e-65 253.8 150 78.0
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 3.4e-65 253.4 156 76.3
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 6.4e-64 249.2 151 72.2
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 6.4e-64 249.2 149 77.9
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 4.1e-63 246.5 151 74.8
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 4.1e-63 246.5 156 74.4
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 1.2e-62 245.0 157 75.8
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 4.6e-62 243.0 156 73.7
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 1.0e-61 241.9 156 73.1
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 5.1e-61 239.6 158 71.5
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 1.1e-60 238.4 151 70.9
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 1.2e-59 235.0 155 69.7
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 1.6e-59 234.6 149 72.5
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 1.4e-58 231.5 150 68.0
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.4e-58 231.5 155 70.3
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 3.1e-58 230.3 150 73.3
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 4.0e-58 229.9 158 67.1
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 4.0e-58 229.9 149 71.1
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 8.9e-58 228.8 154 68.8
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 8.9e-58 228.8 154 68.8
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 1.5e-57 228.0 152 69.1
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 3.4e-57 226.9 153 68.6
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 5.8e-57 226.1 159 68.6
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 9.9e-57 225.3 149 70.5
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 9.9e-57 225.3 150 70.7
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.3e-56 224.9 148 70.3
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 3.7e-56 223.4 149 69.8
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 8.3e-56 222.2 151 66.2
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 8.3e-56 222.2 149 69.1
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 1.9e-55 221.1 296 48.0
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 1.9e-55 221.1 154 67.5
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 7.1e-55 219.2 154 65.6
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 2.1e-54 217.6 150 70.7
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 3.5e-54 216.9 155 67.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 6.0e-54 216.1 153 64.7
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 1.3e-53 214.9 149 65.1
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 2.3e-53 214.2 156 66.7
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 3.9e-53 213.4 148 66.9
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 5.1e-53 213.0 152 67.1
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 5.1e-53 213.0 152 67.1
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 8.6e-53 212.2 151 66.2
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 1.1e-52 211.8 151 66.2
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.9e-52 211.1 152 66.4
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 1.9e-52 211.1 152 66.4
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 2.5e-52 210.7 151 64.9
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 4.7e-51 206.5 148 62.2
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 4.7e-51 206.5 148 62.2
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 8.1e-51 205.7 153 63.4
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 8.1e-51 205.7 156 65.4
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 8.1e-51 205.7 154 59.1
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 2.4e-50 204.1 151 62.9
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 2.4e-50 204.1 117 78.6
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 8.9e-50 202.2 150 66.7
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 4.4e-49 199.9 149 61.7
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 7.6e-49 199.1 153 61.4
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 9.9e-49 198.7 149 61.7
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 2.9e-48 197.2 151 60.3
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.1e-47 195.3 151 59.6
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 2.4e-47 194.1 152 61.2
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.6e-46 191.4 278 45.3
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 3.5e-46 190.3 131 67.9
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 6.0e-46 189.5 154 59.1
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.0e-45 188.7 117 74.4
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 3.0e-45 187.2 297 41.1
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 1.5e-44 184.9 152 57.2
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 1.1e-42 178.7 120 69.2
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 3.1e-42 177.2 234 44.4
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 5.3e-42 176.4 220 47.7
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 6.9e-42 176.0 150 56.7
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 2.9e-40 170.6 155 54.8
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 4.9e-40 169.9 265 40.8
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 6.4e-40 169.5 299 38.8
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 5.4e-39 166.4 286 37.4
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 3.5e-38 163.7 286 36.7
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 1.0e-37 162.2 277 37.9
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 2.3e-37 161.0 122 62.3
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.5e-36 158.3 219 43.8
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.9e-36 157.9 251 41.0
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 4.3e-36 156.8 255 39.6
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 4.3e-36 156.8 290 37.6
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 2.1e-35 154.5 220 43.6
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 6.2e-35 152.9 217 43.3
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.8e-34 151.4 219 42.0
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 2.4e-34 151.0 244 38.1
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.2e-33 148.7 227 42.3
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 1.5e-33 148.3 253 39.5
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 2.6e-33 147.5 257 39.3
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 4.5e-33 146.7 206 45.1
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 7.6e-33 146.0 243 39.5
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 1.7e-32 144.8 259 39.4
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 2.2e-32 144.4 220 40.9
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 1.1e-31 142.1 216 41.7
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 2.4e-31 141.0 231 39.4
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 5.4e-31 139.8 261 39.1
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 7.1e-31 139.4 100 68.0
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 4.6e-30 136.7 220 38.2
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.0e-30 136.3 230 37.0
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 2.3e-29 134.4 247 38.1
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 8.7e-29 132.5 244 34.8
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 8.7e-29 132.5 248 35.9
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 1.1e-28 132.1 295 34.2
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 2.5e-28 131.0 231 37.2
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 7.4e-28 129.4 285 31.9
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.3e-27 128.6 487 26.7
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.6e-27 128.3 264 35.2
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 2.1e-27 127.9 139 42.4
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 4.8e-27 126.7 249 35.3
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 6.2e-27 126.3 98 69.4
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 1.4e-26 125.2 249 36.1
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 1.4e-26 125.2 251 35.1
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 1.4e-26 125.2 251 34.7
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 5.3e-26 123.2 189 41.8
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 6.9e-26 122.9 227 35.2
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 9.0e-26 122.5 247 34.8
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 1.5e-25 121.7 284 32.4
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 2.6e-25 120.9 251 34.3
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 2.6e-25 120.9 219 35.6
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 4.5e-25 120.2 263 34.2
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 7.6e-25 119.4 284 32.4
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 1.3e-24 118.6 159 42.1
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 2.2e-24 117.9 252 36.1
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 4.9e-24 116.7 292 32.2
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 6.5e-24 116.3 226 35.0
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 3.2e-23 114.0 233 33.0
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 7.1e-23 112.8 271 30.3
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.3e-21 108.6 232 35.3
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.3e-21 108.6 232 35.3
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 3.0e-21 107.5 289 31.1
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 5.1e-21 106.7 265 32.1
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 5.1e-21 106.7 265 32.1
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 6.7e-21 106.3 292 27.7
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 6.7e-21 106.3 248 32.3
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 1.9e-20 104.8 178 41.0
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 1.9e-20 104.8 156 39.7
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 2.5e-20 104.4 256 32.4
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 4.3e-20 103.6 225 32.9
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 9.6e-20 102.4 175 38.3
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 1.3e-19 102.1 157 39.5
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 1.3e-19 102.1 151 41.1
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 1.6e-19 101.7 207 34.3
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 1.1e-18 99.0 148 40.5
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 5.3e-18 96.7 249 29.7
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 1.2e-17 95.5 143 41.3
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 3.4e-17 94.0 150 36.0
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 4.5e-17 93.6 152 34.9
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 1.7e-16 91.7 285 32.3
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 2.9e-16 90.9 191 35.1
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 2.9e-16 90.9 245 31.0
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 1.1e-15 89.0 192 35.4
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 1.1e-15 89.0 182 33.0
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 2.5e-15 87.8 223 29.6
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 4.2e-15 87.0 155 38.1
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 5.5e-15 86.7 54 70.4
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 1.2e-14 85.5 56 66.1
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 1.2e-14 85.5 158 35.4
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 3.5e-14 84.0 218 29.4
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 1.0e-13 82.4 153 34.6
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 1.3e-13 82.0 238 28.2
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 1.8e-13 81.6 128 37.5
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 5.1e-13 80.1 79 49.4
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 6.7e-13 79.7 293 27.0
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 1.9e-12 78.2 236 26.3
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.5e-12 77.8 71 52.1
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.5e-12 77.8 71 52.1
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 3.1e-10 70.9 264 27.3
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.5e-09 68.6 161 34.8
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 5.9e-09 66.6 106 34.9
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 1.0e-08 65.9 234 24.8


User provided reference genes

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