Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1546.9 785 100.0
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1397.1 743 95.7
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1170.2 750 79.7
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1168.7 750 79.6
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1167.9 752 78.5
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1144.0 748 77.1
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1134.0 750 77.6
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1131.3 746 76.9
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1128.2 750 76.7
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1127.9 746 77.2
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1127.9 752 77.1
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1125.5 756 76.2
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1123.2 750 75.7
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1123.2 747 77.0
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1120.5 748 75.3
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1120.1 751 77.1
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1119.4 766 75.1
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1115.9 751 76.8
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1101.7 751 75.2
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1095.9 747 74.6
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1095.9 755 74.8
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 749 74.0
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1092.4 746 74.5
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1090.1 752 73.4
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1089.3 750 73.6
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1084.7 750 73.7
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1080.5 750 72.4
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1077.8 750 72.3
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 5.4e-312 1073.9 746 72.9
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 4.1e-310 1067.8 760 71.2
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 3.4e-309 1064.7 710 78.2
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 4.5e-309 1064.3 750 72.1
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.2e-308 1062.0 751 74.2
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 3.8e-308 1061.2 775 69.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 8.2e-303 1043.5 750 70.0
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.4e-302 1042.7 853 66.1
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 2.4e-302 1042.0 749 71.0
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 3.1e-302 1041.6 751 70.4
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 9.1e-302 1040.0 750 70.0
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 5.9e-301 1037.3 750 70.7
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.3e-300 1036.2 750 70.4
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 5.0e-300 1034.2 750 70.3
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 6.5e-300 1033.9 749 69.4
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 2.5e-299 1031.9 750 71.1
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 7.2e-299 1030.4 753 69.2
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 3.6e-298 1028.1 762 68.2
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-297 1026.2 746 71.0
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 1.4e-297 1026.2 841 64.9
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.3e-295 1019.6 750 68.8
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 2.2e-295 1018.8 755 68.3
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 1.2e-293 1013.1 750 69.2
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 1.6e-293 1012.7 751 67.9
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 3.5e-293 1011.5 747 68.9
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.0e-292 1010.0 750 68.4
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 2.9e-292 1008.4 751 68.2
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 3.8e-292 1008.1 759 67.6
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 5.5e-291 1004.2 747 67.5
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 5.5e-291 1004.2 747 67.5
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.6e-290 1001.5 750 68.4
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 5.2e-289 997.7 751 68.6
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 4.4e-288 994.6 750 68.3
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 9.1e-286 986.9 751 66.7
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 7.7e-285 983.8 754 67.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.3e-284 983.0 750 67.3
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 5.0e-284 981.1 752 66.4
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 6.5e-284 980.7 750 68.3
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 7.2e-283 977.2 776 65.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.6e-280 968.8 751 65.8
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 7.5e-280 967.2 751 65.6
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.7e-279 964.9 807 62.1
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 2.7e-277 958.7 752 67.3
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 4.5e-277 958.0 747 65.5
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 4.2e-275 951.4 694 71.3
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 2.1e-274 949.1 748 64.6
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 5.2e-273 944.5 751 65.6
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.5e-272 943.0 850 58.6
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 3.4e-272 941.8 750 64.8
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 9.8e-272 940.3 776 65.2
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 2.8e-271 938.7 753 66.0
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 3.7e-271 938.3 752 63.7
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.6e-269 932.9 747 64.0
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.9e-269 931.0 750 63.7
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 4.0e-257 891.7 756 60.8
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 8.1e-242 840.9 754 58.1
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 7.1e-238 827.8 746 59.4
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 2.3e-236 822.8 764 56.9
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 9.3e-214 747.7 497 73.8
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 4.3e-211 738.8 540 72.2
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 4.9e-207 725.3 738 50.7
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 6.9e-201 704.9 511 72.0
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 4.5e-192 675.6 479 72.7
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 3.0e-180 636.3 570 61.2
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.8e-177 627.1 738 48.4
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.1e-177 626.3 435 70.8
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-141 507.7 404 66.1
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 4.7e-141 506.1 767 40.2
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 5.8e-139 499.2 776 39.2
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 6.0e-136 489.2 485 54.6
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 7.3e-126 455.7 454 58.1
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 2.0e-107 394.4 439 53.5
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-103 381.7 444 50.0
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.9e-102 377.9 810 32.6
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 2.1e-101 374.4 720 33.9
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 4.9e-90 336.7 376 51.3
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 7.9e-88 329.3 190 78.4
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-86 324.3 256 65.6
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.6e-85 321.6 362 50.6
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 1.2e-75 288.9 238 64.7
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-72 278.5 182 76.4
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.4e-71 275.4 229 59.4
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.7e-56 223.8 369 38.2
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 2.0e-51 208.4 433 33.3
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 3.6e-48 197.6 331 42.6
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 7.5e-46 189.9 174 66.1
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 2.8e-45 188.0 225 47.6
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.8e-36 158.7 205 44.9
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 3.8e-34 151.0 109 62.4
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 3.3e-33 147.9 456 26.1
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.2e-30 139.4 496 24.6
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.5e-30 139.0 88 75.0
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.5e-30 139.0 160 49.4
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 4.4e-30 137.5 71 87.3
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-29 136.0 105 64.8
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 2.2e-29 135.2 109 57.8
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.3e-29 133.3 88 72.7
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 3.2e-28 131.3 109 56.9
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 2.0e-27 128.6 508 23.8
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 4.6e-27 127.5 86 70.9
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 4.6e-27 127.5 88 70.5
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.3e-26 125.9 86 69.8
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.6e-26 123.6 84 72.6
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.1e-25 122.9 61 91.8
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.9e-25 122.1 84 69.0
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-25 122.1 90 62.2
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.0e-24 116.7 79 73.4
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.4e-23 115.9 61 86.9
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.0e-22 112.1 149 46.3
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 1.7e-21 109.0 61 77.0
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.7e-19 101.7 61 80.3
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 5.1e-18 97.4 55 80.0
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 5.6e-17 94.0 53 81.1
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.2e-16 92.8 57 77.2
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 4.7e-16 90.9 78 52.6
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.0e-15 87.8 55 78.2
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.0e-15 87.8 55 78.2
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.5e-14 85.9 88 54.5
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 2.2e-13 82.0 80 48.8
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.2e-12 78.2 61 59.0
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.4e-12 77.4 55 61.8
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-11 75.5 55 60.0
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.1e-10 70.9 60 58.3
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.5e-09 66.6 88 44.3
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 1.2e-08 66.2 44 72.7
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 2.4e-07 62.0 31 87.1
Aqoxy3G02567 Aquilegia oxysepala HOM05D000526 ORTHO05D000956 5.8e-06 57.4 80 40.0
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.6e-06 57.0 82 43.9


User provided reference genes

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