Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 2803.9 1510 100.0
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 2598.5 1510 90.8
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1496.9 1522 58.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1470.7 1570 54.1
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1466.4 1531 57.3
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1445.6 1555 53.6
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1411.4 1618 52.3
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1380.9 1519 53.7
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1372.1 1528 54.2
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1369.0 1544 53.3
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1356.3 1527 51.9
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1342.8 1606 52.0
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1340.5 1828 48.5
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1340.1 1522 51.9
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1339.3 1535 53.4
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1336.6 1530 54.5
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1335.9 1540 53.1
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1335.5 1523 51.3
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1334.7 1547 53.3
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1333.5 1535 52.9
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1311.6 1511 49.3
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1308.9 1586 51.6
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1300.8 1516 52.8
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1300.8 1535 52.5
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1300.8 1531 54.5
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1286.2 1564 48.8
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1278.1 1624 50.2
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1268.8 1559 52.9
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1266.5 1521 48.5
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1265.0 1520 48.6
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1263.1 1596 50.8
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1262.7 1506 52.9
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1252.3 1530 52.2
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1251.1 1519 49.2
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1248.4 1522 49.5
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1247.3 1522 52.3
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1236.1 1522 49.3
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1231.5 1531 49.2
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1229.5 1504 52.4
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1227.2 1501 49.8
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1225.7 1513 51.0
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1221.5 1591 50.1
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1220.3 1540 50.8
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1217.6 1537 50.4
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1203.7 1527 51.2
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1182.9 1545 48.2
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1181.8 1554 49.2
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1172.9 1527 47.2
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1162.9 1562 48.7
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1159.4 1554 48.5
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1156.7 1556 49.0
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1155.6 1533 49.0
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1142.5 1525 46.0
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1139.4 1550 45.9
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1136.7 1541 48.0
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1130.2 1546 48.5
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1125.9 1576 45.1
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1125.2 1551 44.7
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1120.5 1526 48.8
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1120.1 1551 44.7
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1119.0 1555 45.5
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1115.5 1540 46.0
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1110.5 1528 45.5
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1109.4 1528 45.0
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1108.2 1519 46.1
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1106.3 1506 48.5
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1105.1 1541 48.3
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1104.4 1525 45.0
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1100.5 1519 47.3
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1096.3 1523 48.1
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1089.7 1549 44.5
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 6.6e-309 1064.7 918 62.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 2.8e-307 1059.3 1512 44.7
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.9e-304 1049.3 1007 57.3
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 5.1e-301 1038.5 1523 45.8
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.0e-297 1026.5 1528 47.0
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 2.7e-294 1016.1 1534 43.2
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.1e-292 1010.7 1592 42.8
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.7e-286 989.6 1383 47.4
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 3.5e-286 989.2 1577 42.2
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 1.0e-285 987.6 1333 46.7
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 6.5e-280 968.4 1515 44.9
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 3.0e-277 959.5 1517 44.0
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.4e-276 954.9 1516 44.7
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 6.9e-274 948.3 991 52.7
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 9.3e-271 937.9 1354 44.2
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 3.0e-269 932.9 2391 33.9
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 2.5e-263 913.3 1516 40.9
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.4e-257 892.9 744 62.9
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 6.7e-245 852.0 1553 42.0
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.5e-228 795.4 1197 47.3
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.9e-223 780.8 1456 38.3
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 6.8e-221 772.3 1511 37.8
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 4.0e-213 746.5 1301 38.7
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.7e-200 704.5 1517 33.6
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.7e-200 704.5 776 51.9
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 5.1e-192 676.4 964 44.1
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 7.8e-185 652.5 1577 34.1
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 2.1e-182 644.4 547 60.5
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 6.2e-166 589.7 1515 32.3
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.1e-166 589.3 704 48.4
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.4e-154 552.0 884 41.1
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.3e-133 480.3 1420 29.9
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.2e-124 452.6 424 58.7
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 8.5e-123 446.4 1539 27.0
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.2e-116 426.0 553 45.6
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.7e-115 422.2 427 58.1
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.6e-106 390.6 635 43.5
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.2e-104 384.0 574 50.5
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 7.3e-98 363.6 897 31.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 8.0e-97 360.1 1591 28.3
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-95 356.3 468 42.3
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 2.5e-90 338.6 1367 26.5
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 7.3e-90 337.0 342 59.4
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.3e-78 299.7 366 47.3
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.9e-78 297.7 290 51.4
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.1e-66 260.0 240 60.0
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 1.3e-62 246.5 454 38.1
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 6.4e-54 217.6 151 73.5
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.1e-49 200.7 1146 27.5
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.4e-48 199.9 903 25.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.7e-44 185.7 558 26.7
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-43 183.7 544 27.2
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.3e-43 182.6 157 62.4
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 2.6e-39 169.1 127 66.1
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.6e-39 167.5 252 48.0
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 6.1e-36 157.9 408 29.7
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 2.2e-33 149.4 155 52.9
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 6.5e-30 137.9 446 29.8
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-25 123.6 457 27.4
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 2.2e-25 122.9 103 62.1
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 6.3e-25 121.3 98 61.2
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.0e-23 116.3 184 40.8
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.4e-19 103.6 364 26.4
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 9.7e-18 97.4 74 63.5
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 5.9e-15 88.2 243 28.8
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.0e-14 85.1 79 60.8
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.4e-11 77.0 73 58.9
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 3.0e-11 75.9 55 69.1
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.5e-10 73.6 53 66.0
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 1.5e-10 73.6 182 33.5
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 7.7e-07 61.2 210 27.6
Pp3c2_28690 Physcomitrium patens HOM05D025785 ORTHO05D030100 7.7e-07 61.2 145 31.0
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 1.3e-06 60.5 163 30.7
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.8e-06 58.9 75 44.0
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 5.0e-06 58.5 231 26.4


User provided reference genes

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