Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.9e-55 218.4 116 100.0
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.0e-44 181.8 113 88.5
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.5e-43 178.7 116 87.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 8.2e-34 147.1 110 73.6
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 6.7e-28 127.5 103 68.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 9.7e-27 123.6 103 66.0
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-26 123.2 107 65.4
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 8.2e-26 120.6 94 69.1
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 8.2e-26 120.6 105 67.6
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.4e-25 119.8 102 64.7
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.1e-25 118.6 107 64.5
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 3.1e-25 118.6 101 62.4
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.1e-25 118.2 112 64.3
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 9.1e-25 117.1 99 65.7
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-24 116.7 108 63.0
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.2e-24 116.7 108 63.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.6e-24 115.5 98 67.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 4.5e-24 114.8 102 65.7
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 5.9e-24 114.4 98 67.3
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-23 113.6 108 62.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.3e-23 113.2 98 66.3
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 3.8e-23 111.7 93 69.9
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.8e-23 111.7 106 54.7
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.0e-23 111.3 106 61.3
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.0e-23 111.3 93 66.7
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 5.0e-23 111.3 108 62.0
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 5.0e-23 111.3 108 62.0
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 8.5e-23 110.5 105 58.1
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 8.5e-23 110.5 105 58.1
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.1e-22 110.2 106 55.7
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.5e-22 109.8 98 64.3
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.5e-22 109.8 98 64.3
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 5.5e-22 107.8 111 56.8
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.4e-22 107.1 108 58.3
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.1e-21 105.9 108 54.6
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.1e-21 105.9 101 54.5
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.1e-21 105.9 107 53.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.1e-21 104.4 103 56.3
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 8.0e-21 104.0 100 57.0
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.0e-20 103.6 107 51.4
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.4e-20 103.2 105 54.3
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.3e-20 102.4 73 69.9
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 4.0e-20 101.7 107 50.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 5.2e-20 101.3 106 52.8
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 5.2e-20 101.3 109 48.6
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 6.8e-20 100.9 112 51.8
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 6.8e-20 100.9 110 50.9
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-19 99.8 94 58.5
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-19 99.8 94 58.5
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.0e-19 99.4 113 53.1
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.0e-19 99.4 103 55.3
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.6e-19 99.0 85 60.0
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 3.4e-19 98.6 109 58.7
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.4e-19 98.2 107 48.6
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 7.5e-19 97.4 102 58.8
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 7.5e-19 97.4 111 50.5
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.7e-19 97.1 93 60.2
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.7e-19 97.1 85 58.8
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 9.7e-19 97.1 100 56.0
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.7e-18 96.3 97 59.8
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.8e-18 95.5 105 49.5
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.7e-18 95.1 85 56.5
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 4.8e-18 94.7 102 50.0
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 6.3e-18 94.4 107 56.1
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 6.3e-18 94.4 103 48.5
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 6.3e-18 94.4 106 45.3
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 6.3e-18 94.4 106 45.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 8.3e-18 94.0 97 54.6
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.1e-17 93.6 92 54.3
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.4e-17 92.4 94 57.4
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 5.3e-17 91.3 109 45.0
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.3e-17 91.3 107 47.7
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.0e-17 90.9 87 56.3
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 9.1e-17 90.5 103 53.4
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.2e-16 90.1 99 49.5
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 1.2e-16 90.1 103 47.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.6e-16 89.7 105 45.7
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.0e-16 89.4 102 48.0
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.7e-16 89.0 82 58.5
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.7e-16 89.0 90 55.6
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.7e-16 89.0 99 49.5
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.5e-16 88.6 99 49.5
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.5e-16 88.2 96 52.1
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.0e-15 87.0 85 56.5
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.9e-15 85.5 63 71.4
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.0e-15 84.7 87 52.9
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 8.5e-15 84.0 92 50.0
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.5e-15 84.0 79 57.0
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 8.5e-15 84.0 90 50.0
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 8.5e-15 84.0 110 46.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.9e-14 82.8 111 43.2
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.9e-14 82.8 63 69.8
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.5e-14 82.4 63 68.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.5e-14 82.4 112 43.8
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 4.2e-14 81.6 91 47.3
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 7.2e-14 80.9 87 48.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 7.2e-14 80.9 94 50.0
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.6e-13 79.7 104 47.1
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 1.6e-13 79.7 103 42.7
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.7e-13 79.0 103 46.6
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 3.6e-13 78.6 104 46.2
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.6e-13 78.6 116 38.8
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 6.1e-13 77.8 103 46.6
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 8.0e-13 77.4 73 54.8
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 8.0e-13 77.4 81 54.3
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.0e-12 77.0 69 60.9
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.4e-12 76.6 103 46.6
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.4e-12 76.6 103 46.6
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.4e-12 76.6 78 53.8
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 2.3e-12 75.9 72 56.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 4.0e-12 75.1 78 52.6
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 4.0e-12 75.1 78 52.6
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 4.0e-12 75.1 64 57.8
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 5.2e-12 74.7 78 52.6
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 8.8e-12 73.9 78 51.3
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 8.8e-12 73.9 78 51.3
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.2e-11 73.6 73 54.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.5e-11 73.2 93 50.5
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.5e-11 73.2 91 45.1
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.0e-11 72.8 87 49.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 2.6e-11 72.4 78 50.0
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.6e-11 72.4 78 53.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 4.4e-11 71.6 103 45.6
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 4.4e-11 71.6 112 37.5
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 9.8e-11 70.5 98 45.9
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.2e-10 69.3 73 53.4
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.2e-10 69.3 89 44.9
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 6.3e-10 67.8 79 45.6
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.1e-09 67.0 78 48.7
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.4e-09 66.6 76 51.3
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.4e-09 66.6 78 51.3
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-09 66.2 78 50.0
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 1.8e-09 66.2 117 35.9
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 1.8e-09 66.2 117 35.9
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.8e-09 66.2 63 55.6
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 2.4e-09 65.9 75 52.0
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.4e-09 65.9 97 38.1
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.1e-09 65.5 112 37.5
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 3.1e-09 65.5 117 35.0
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 3.1e-09 65.5 117 35.0
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-09 65.1 75 50.7
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.1e-09 65.1 75 50.7
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 5.4e-09 64.7 78 50.0
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 5.4e-09 64.7 115 37.4
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.0e-09 64.3 113 37.2
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 9.1e-09 63.9 80 45.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.7e-08 62.4 76 48.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 7.7e-08 60.8 103 37.9
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 7.7e-08 60.8 103 37.9
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 7.7e-08 60.8 103 37.9
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 1.0e-07 60.5 103 37.9
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 1.3e-07 60.1 114 35.1
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 1.3e-07 60.1 114 35.1
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.7e-07 59.7 70 47.1
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.9e-07 58.9 56 55.4
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.8e-07 58.5 80 41.2
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 5.0e-07 58.2 71 47.9
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 8.6e-07 57.4 113 34.5
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 8.6e-07 57.4 76 43.4
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 8.6e-07 57.4 76 43.4
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 8.6e-07 57.4 76 43.4
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.1e-06 57.0 66 51.5
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.5e-06 56.6 66 50.0
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 1.5e-06 56.6 59 52.5
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 9.5e-06 53.9 70 44.3


User provided reference genes

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