Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.0e-260 902.1 530 100.0
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 6.7e-232 807.4 530 90.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 9.5e-170 600.9 526 62.4
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.1e-161 573.2 507 61.3
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 7.8e-156 554.7 496 61.5
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 4.3e-154 548.9 528 62.3
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 9.5e-154 547.7 501 59.9
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 4.7e-153 545.4 493 61.7
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 4.7e-153 545.4 507 62.7
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.3e-152 543.1 500 62.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 5.8e-151 538.5 495 59.6
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.3e-150 537.3 515 59.2
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 2.2e-150 536.6 492 60.2
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 5.1e-147 525.4 493 59.6
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 6.6e-147 525.0 494 56.9
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.5e-146 523.9 498 58.8
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.5e-146 523.9 493 59.4
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.9e-146 523.5 506 60.5
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 4.3e-146 522.3 499 56.9
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 4.3e-146 522.3 498 57.4
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 9.9e-143 511.1 505 60.2
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.7e-142 510.4 491 57.8
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.7e-142 510.4 519 57.4
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.9e-142 509.6 505 60.2
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 4.9e-142 508.8 498 57.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.4e-141 507.3 526 54.2
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 9.3e-141 504.6 494 56.7
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.2e-140 504.2 497 57.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.1e-140 503.4 492 58.5
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 2.7e-140 503.1 500 56.6
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 6.6e-139 498.4 507 55.0
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.9e-138 496.9 524 55.9
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 7.3e-138 495.0 493 55.0
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 7.3e-138 495.0 493 55.0
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 2.1e-137 493.4 495 56.6
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 2.1e-137 493.4 497 57.1
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.8e-137 493.0 519 53.8
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 6.2e-137 491.9 497 57.1
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.1e-136 491.1 493 55.2
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 6.9e-136 488.4 496 55.0
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.2e-135 487.6 497 57.1
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 7.6e-135 485.0 499 55.9
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 7.6e-135 485.0 497 56.5
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 2.2e-134 483.4 492 56.9
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.9e-133 480.3 497 55.1
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 5.4e-133 478.8 494 53.2
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 7.1e-133 478.4 497 55.3
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 7.1e-133 478.4 496 55.4
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 1.6e-132 477.2 492 57.3
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.1e-132 476.9 541 53.2
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 3.0e-131 473.0 504 56.3
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 8.7e-131 471.5 492 57.9
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 8.7e-131 471.5 540 52.0
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.9e-130 470.3 500 53.0
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.9e-130 470.3 536 51.9
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 3.3e-130 469.5 501 56.1
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 4.3e-130 469.2 504 53.0
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-129 467.6 506 55.1
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 2.1e-129 466.8 492 53.7
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.7e-129 466.1 505 53.9
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.4e-128 464.2 499 52.7
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 3.1e-128 463.0 506 54.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 4.0e-128 462.6 500 52.2
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 5.3e-128 462.2 496 52.6
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 9.0e-128 461.5 364 68.4
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.2e-127 461.1 495 53.1
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.5e-127 460.7 494 52.8
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.5e-127 460.7 527 48.6
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 3.4e-127 459.5 496 52.2
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 7.6e-127 458.4 507 54.0
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 9.9e-127 458.0 514 52.9
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.7e-126 457.2 500 51.6
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 6.4e-126 455.3 491 57.4
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 8.4e-126 454.9 498 51.2
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.6e-124 450.7 494 51.6
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.9e-124 448.4 512 54.5
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 7.9e-124 448.4 499 52.7
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 3.9e-123 446.0 536 48.9
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.8e-121 439.9 275 74.5
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.8e-121 439.9 275 76.0
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.4e-120 436.8 494 53.0
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 4.0e-120 436.0 501 51.5
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.7e-118 430.6 504 50.2
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 6.5e-118 428.7 525 44.4
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.1e-117 427.9 499 49.9
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.5e-117 426.8 534 47.6
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 7.1e-117 425.2 537 48.6
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.9e-114 417.2 271 74.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 9.7e-114 414.8 547 46.4
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.6e-111 406.8 271 71.2
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 5.0e-110 402.5 260 73.8
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 7.2e-109 398.7 277 70.0
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-108 397.9 278 68.3
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.1e-108 397.1 268 66.8
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 3.6e-108 396.4 273 70.7
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.0e-107 394.8 267 66.3
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 4.3e-106 389.4 271 68.6
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.3e-105 387.9 268 63.8
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 4.8e-105 386.0 274 64.2
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 8.5e-102 375.2 275 66.5
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 2.7e-100 370.2 553 42.9
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 4.6e-100 369.4 491 45.6
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.0e-99 366.7 265 63.8
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.0e-95 354.0 267 61.8
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 2.6e-95 353.6 234 73.1
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.0e-94 351.7 264 62.1
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.0e-90 337.4 267 60.7
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 4.5e-87 326.2 283 56.9
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.0e-86 325.1 247 62.3
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 6.5e-86 322.4 197 77.7
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.6e-84 317.8 268 59.3
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.3e-80 302.8 173 80.3
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.9e-77 294.3 266 56.0
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-74 285.0 270 53.7
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 1.8e-72 277.7 189 66.7
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.1e-72 276.9 270 53.3
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.0e-60 235.7 269 49.4
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.3e-59 234.2 219 52.5
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 3.7e-57 226.9 137 74.5
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 4.9e-57 226.5 265 46.4
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 4.6e-55 219.9 174 61.5
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.1e-53 215.3 269 46.5
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 4.1e-48 196.8 314 45.2
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.2e-47 195.3 133 69.2
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 6.0e-47 193.0 136 69.1
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 5.0e-46 189.9 294 45.6
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.9e-45 188.0 104 78.8
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.2e-44 185.3 256 41.4
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 4.9e-41 173.3 287 35.9
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.2e-39 168.7 296 35.1
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.5e-39 167.2 302 39.7
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.5e-37 161.8 294 35.0
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.3e-33 148.7 151 51.7
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 7.1e-32 142.9 98 64.3
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.2e-28 129.8 294 31.3
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.6e-26 124.4 119 51.3
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 4.4e-26 123.6 75 77.3
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.7e-25 121.7 282 30.1
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 3.9e-22 110.5 143 55.2
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 3.3e-21 107.5 271 34.3
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 5.6e-21 106.7 182 40.7
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 4.6e-15 87.0 113 45.1
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.7e-14 83.2 52 65.4
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 2.8e-12 77.8 68 51.5
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 6.9e-11 73.2 67 52.2
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-07 62.4 104 34.6
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.6e-07 62.0 63 47.6
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.5e-07 60.8 37 70.3


User provided reference genes

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