Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 5.4e-142 508.1 340 100.0
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.2e-112 410.6 345 87.0
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 2.8e-82 309.7 344 58.4
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.8e-82 309.7 344 58.4
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-78 297.0 347 62.5
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.8e-76 290.4 344 56.1
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.3e-75 285.8 346 70.2
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.7e-75 284.6 347 71.5
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.7e-68 261.9 322 55.9
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.7e-58 230.7 361 47.4
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.8e-58 229.9 321 63.9
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 2.6e-56 223.4 364 47.3
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 7.7e-56 221.9 287 52.6
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 5.0e-55 219.2 329 48.3
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.1e-54 218.0 350 53.1
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.1e-53 213.8 338 49.1
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 4.7e-53 212.6 301 54.8
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.7e-53 212.6 355 49.0
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.4e-52 211.1 347 49.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 3.0e-52 209.9 347 47.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 4.0e-52 209.5 337 48.7
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 5.2e-52 209.1 345 46.4
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 8.8e-52 208.4 347 48.1
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 2.0e-51 207.2 361 44.9
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 9.7e-51 204.9 382 49.5
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 9.7e-51 204.9 338 45.0
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-50 204.5 345 46.1
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.7e-50 204.1 361 45.7
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.8e-50 203.4 329 45.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 2.8e-50 203.4 347 45.5
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 4.8e-50 202.6 357 45.1
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 6.3e-50 202.2 335 47.5
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.4e-49 201.1 339 51.3
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 7.0e-49 198.7 332 46.7
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 7.0e-49 198.7 353 45.9
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 7.0e-49 198.7 347 46.1
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.2e-48 198.0 368 43.5
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.2e-48 198.0 345 43.2
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.6e-48 197.6 358 45.0
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 7.7e-48 195.3 340 49.7
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.0e-47 194.9 345 44.9
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.0e-47 194.9 329 46.8
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.0e-47 194.9 329 46.8
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.2e-47 193.7 350 45.7
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 6.5e-47 192.2 349 44.1
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.5e-47 192.2 368 44.3
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.1e-46 191.4 339 47.5
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.5e-46 191.0 317 53.6
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 3.2e-46 189.9 313 50.8
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-45 188.0 361 44.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.6e-45 187.6 346 49.1
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 3.6e-45 186.4 343 42.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 6.1e-45 185.7 353 41.1
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 8.0e-45 185.3 357 43.7
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.4e-44 184.5 349 43.3
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 2.3e-44 183.7 330 45.8
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 3.0e-44 183.3 323 46.1
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 4.0e-44 183.0 343 46.9
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 8.8e-44 181.8 353 42.5
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.2e-43 181.4 330 46.1
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 3.4e-43 179.9 195 57.4
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.4e-43 179.5 334 43.7
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 7.5e-43 178.7 340 42.6
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 7.5e-43 178.7 358 43.9
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 9.8e-43 178.3 364 43.7
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.3e-42 177.9 338 42.6
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.7e-42 177.6 358 42.5
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.2e-42 177.2 346 41.6
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.8e-42 176.8 353 42.2
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.8e-42 176.0 354 40.7
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 4.8e-42 176.0 352 42.9
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.4e-41 173.7 340 42.1
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 4.1e-41 172.9 342 43.9
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 4.1e-41 172.9 336 46.4
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 4.1e-41 172.9 339 50.4
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 5.4e-41 172.6 342 43.9
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.4e-41 172.6 344 42.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 7.0e-41 172.2 329 47.1
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 9.1e-41 171.8 339 44.8
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.2e-40 171.4 353 39.4
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-40 171.0 344 44.2
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.6e-40 171.0 344 44.2
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.6e-40 171.0 344 44.2
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-40 171.0 337 40.9
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.6e-40 171.0 343 46.4
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 2.7e-40 170.2 330 45.8
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.7e-40 170.2 341 41.3
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.0e-39 168.3 342 38.6
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 2.9e-39 166.8 342 41.2
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.8e-39 166.4 353 43.9
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.1e-38 164.9 333 43.8
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.1e-38 164.9 359 41.8
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.5e-38 164.5 336 41.1
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.9e-38 164.1 339 42.8
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 2.5e-38 163.7 363 41.9
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 3.2e-38 163.3 345 40.6
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.7e-37 160.2 337 43.6
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 8.0e-37 158.7 342 41.2
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 8.0e-37 158.7 348 40.2
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.4e-36 157.9 336 42.9
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.4e-36 157.9 349 42.1
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.0e-36 156.8 329 38.6
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 3.0e-36 156.8 287 44.3
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 8.8e-36 155.2 345 44.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.5e-35 154.5 336 42.6
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 3.7e-34 149.8 287 44.9
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 8.3e-34 148.7 337 41.2
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.4e-33 147.9 317 42.0
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.4e-33 147.9 396 39.9
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.1e-33 146.4 297 42.8
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.4e-33 146.0 345 40.0
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 7.0e-33 145.6 326 37.4
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.0e-31 141.7 330 40.0
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.7e-31 141.0 216 52.3
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 2.3e-31 140.6 287 39.0
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 8.6e-31 138.7 333 43.5
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 9.5e-30 135.2 287 40.1
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.4e-28 131.3 335 43.9
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.8e-28 131.0 406 37.2
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 5.2e-28 129.4 357 33.6
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 5.2e-28 129.4 345 35.9
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.0e-27 127.5 289 37.7
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.0e-27 127.5 345 36.2
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 5.7e-27 125.9 261 41.4
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 4.9e-26 122.9 381 34.9
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 6.4e-26 122.5 193 45.6
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 8.3e-26 122.1 342 35.4
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.1e-25 121.7 352 37.5
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 3.2e-25 120.2 332 38.6
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 4.1e-25 119.8 351 36.2
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.0e-24 117.5 176 49.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 4.6e-24 116.3 361 37.4
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.8e-24 115.5 277 37.2
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.7e-23 114.4 352 33.0
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 8.6e-23 112.1 331 39.3
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.0e-20 105.1 291 37.1
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.8e-20 104.4 200 40.5
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.2e-20 102.8 313 33.5
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.6e-19 100.5 174 43.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 4.9e-18 96.3 208 42.3
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 3.2e-17 93.6 330 31.5
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.1e-17 93.2 292 37.3
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.6e-16 91.3 167 43.1
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.7e-16 90.5 317 32.5
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 7.8e-16 89.0 185 39.5
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.7e-15 87.8 279 33.0
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 1.8e-12 77.8 171 36.8
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 6.8e-12 75.9 155 41.3
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 5.4e-09 66.2 118 43.2
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 5.4e-09 66.2 149 36.9
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.1e-09 65.9 116 44.0
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 2.1e-08 64.3 318 35.2
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.7e-07 61.2 103 41.7
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.0e-07 60.5 359 29.0
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 3.9e-07 60.1 148 43.2


User provided reference genes

Program Settings