Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.3e-210 736.1 361 100.0
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.0e-183 646.7 341 92.7
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.5e-158 563.1 359 77.4
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.5e-158 563.1 359 77.4
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 9.1e-156 553.9 357 77.3
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.2e-136 490.3 370 69.2
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 1.6e-136 490.0 370 69.5
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 2.1e-136 489.6 365 68.2
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 4.8e-133 478.4 366 69.1
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 4.8e-133 478.4 308 73.4
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.4e-132 476.1 361 68.1
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.4e-132 476.1 361 67.3
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 2.0e-131 473.0 361 68.1
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.0e-131 473.0 370 67.0
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.0e-130 470.7 368 68.2
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.0e-130 470.7 307 75.2
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.8e-130 468.8 364 65.9
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 5.0e-130 468.4 363 65.8
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 2.5e-129 466.1 362 66.0
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 3.2e-129 465.7 362 66.6
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.2e-129 465.7 363 65.3
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 5.5e-129 464.9 362 67.4
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 7.2e-129 464.5 316 71.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 1.2e-128 463.8 312 72.8
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 4.7e-128 461.8 303 72.6
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 4.7e-128 461.8 303 72.6
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 6.1e-128 461.5 303 72.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 3.0e-127 459.1 363 66.4
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 4.0e-127 458.8 357 67.8
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 8.8e-127 457.6 369 63.4
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.2e-126 457.2 319 71.8
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.2e-126 457.2 358 64.8
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 2.0e-126 456.4 304 72.0
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 2.6e-126 456.1 348 65.8
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 4.4e-126 455.3 330 67.9
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 5.7e-126 454.9 328 72.3
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 5.7e-126 454.9 309 71.2
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 7.5e-126 454.5 315 72.1
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 7.5e-126 454.5 351 65.0
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 7.5e-126 454.5 361 67.0
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 2.2e-125 453.0 351 67.5
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.2e-125 453.0 364 63.7
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 4.9e-125 451.8 353 64.0
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 6.3e-125 451.4 329 67.5
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 1.8e-124 449.9 358 64.0
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 3.1e-124 449.1 370 62.7
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 4.1e-124 448.7 362 65.2
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 5.4e-124 448.4 347 66.3
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 5.4e-124 448.4 313 70.0
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 2.0e-123 446.4 366 64.5
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 3.5e-123 445.7 305 70.5
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.5e-123 445.7 320 68.1
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 3.5e-123 445.7 361 65.9
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 4.5e-123 445.3 372 64.0
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 7.7e-123 444.5 322 68.3
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.0e-122 444.1 305 71.5
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.0e-122 444.1 309 71.2
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.3e-122 443.7 317 66.9
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.7e-122 443.4 347 67.4
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.7e-122 443.4 301 72.4
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 8.6e-122 441.0 307 69.1
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 8.6e-122 441.0 304 69.7
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.1e-121 440.7 354 62.1
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.1e-121 440.7 317 68.1
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.9e-121 439.9 262 78.2
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 5.6e-121 438.3 347 64.0
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 9.5e-121 437.6 347 66.3
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.2e-120 437.2 365 64.4
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.6e-120 435.6 374 63.1
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 6.1e-120 434.9 334 64.1
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 2.3e-119 433.0 298 70.5
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 2.3e-119 433.0 298 70.5
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 2.3e-119 433.0 358 62.3
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 4.0e-119 432.2 334 67.1
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 4.0e-119 432.2 352 63.4
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 6.8e-119 431.4 296 70.3
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.2e-118 430.6 296 70.3
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 3.7e-117 425.6 333 66.4
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 8.3e-117 424.5 316 65.8
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 3.2e-116 422.5 369 60.4
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 4.1e-116 422.2 298 68.8
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 7.0e-116 421.4 296 69.3
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.2e-115 420.6 286 71.7
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 7.8e-115 417.9 297 69.0
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.3e-114 417.2 314 65.9
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 3.9e-114 415.6 340 62.1
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.5e-113 413.7 372 59.4
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.2e-112 410.6 298 67.8
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.4e-111 407.1 294 68.4
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 3.1e-111 406.0 226 83.2
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.7e-109 400.2 295 67.1
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.7e-109 400.2 287 68.6
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.9e-108 396.7 350 60.0
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 6.6e-106 388.3 379 55.7
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 4.3e-105 385.6 367 56.9
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 6.2e-104 381.7 302 63.2
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.1e-103 379.4 409 51.8
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 6.8e-103 378.3 305 60.7
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.4e-100 370.5 290 66.6
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.4e-100 369.8 265 64.2
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 5.4e-100 368.6 299 63.9
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 2.1e-99 366.7 368 53.8
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.6e-99 365.5 294 61.6
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 7.8e-99 364.8 268 64.2
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.3e-98 363.2 360 54.4
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.2e-96 357.5 297 61.6
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.2e-96 355.1 221 73.3
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 8.4e-93 344.7 228 70.6
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 2.0e-86 323.6 248 67.7
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.4e-84 317.4 242 65.3
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 8.4e-77 291.6 346 48.3
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 2.1e-75 287.0 372 48.7
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.3e-73 279.3 278 55.8
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 4.0e-71 272.7 283 49.1
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 5.3e-71 272.3 216 60.2
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.6e-67 260.8 238 58.0
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.8e-64 250.0 242 58.7
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 5.3e-63 245.7 201 57.7
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 2.0e-62 243.8 236 57.6
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.0e-62 243.8 231 51.1
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 4.2e-60 236.1 190 58.4
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 5.5e-60 235.7 200 55.5
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 3.9e-58 229.6 210 54.3
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 9.0e-55 218.4 195 55.9
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 2.5e-52 210.3 246 44.7
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.7e-48 196.4 305 42.6
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.4e-47 193.7 297 44.8
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 5.9e-46 189.1 111 78.4
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.2e-40 170.6 181 52.5
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.6e-38 163.7 145 53.1
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.6e-35 154.5 87 77.0
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.4e-34 151.4 106 65.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 2.2e-32 144.1 101 67.3
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 2.8e-32 143.7 112 64.3
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.9e-28 131.0 68 83.8
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 1.6e-19 101.3 114 50.0
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 4.8e-16 89.7 65 61.5
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 1.4e-15 88.2 89 57.3
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.6e-14 84.7 100 50.0
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 1.3e-13 81.6 125 40.8
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 2.5e-12 77.4 37 83.8
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 4.2e-12 76.6 81 48.1
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 6.1e-11 72.8 50 66.0
Prupe.1G061900 Prunus persica HOM05D001659 ORTHO05D001659 7.5e-09 65.9 208 26.4
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 3.7e-08 63.5 242 26.0
Sopen08g001570 Solanum pennellii HOM05D001659 ORTHO05D001659 9.2e-07 58.9 182 26.4
Solyc08g005550.4 Solanum lycopersicum HOM05D001659 ORTHO05D001659 1.2e-06 58.5 180 25.0
PGSC0003DMG400018484 Solanum tuberosum HOM05D001659 ORTHO05D001659 1.6e-06 58.2 180 25.0
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.7e-06 57.4 53 56.6
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 5.9e-06 56.2 71 49.3
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 5.9e-06 56.2 40 55.0
THA.LOC104814432 Tarenaya hassleriana HOM05D001659 ORTHO05D001659 7.8e-06 55.8 181 27.1


User provided reference genes

Program Settings