Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 3759.5 1926 100.0
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 3340.1 1953 88.8
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 3207.9 1953 85.7
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 3149.0 2052 81.1
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2787.7 1972 74.9
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2671.7 1982 71.6
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2671.0 1995 71.3
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2628.6 2024 69.7
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2626.3 1986 70.7
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2621.3 1988 70.2
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2603.2 2014 69.8
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2570.8 2111 66.7
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2561.6 1980 69.1
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2543.8 1988 69.0
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2536.5 1980 68.7
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2515.7 1987 68.4
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2473.0 1976 67.8
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2461.0 1979 67.5
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2449.5 1986 67.0
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2435.2 1983 66.8
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2432.5 1977 66.1
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2431.0 1968 66.8
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2423.7 1977 66.3
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2422.9 1982 66.5
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2414.0 1977 66.1
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2408.6 1997 65.9
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2405.9 1976 65.4
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2400.9 1995 66.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2395.2 1977 65.1
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2390.9 1970 66.2
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2374.7 1987 64.7
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2360.5 1968 64.7
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2358.2 1978 64.7
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2349.7 1972 65.5
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2343.9 2081 61.8
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2339.3 2028 63.9
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2335.1 1975 63.4
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2324.3 1979 64.2
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2320.4 1990 64.8
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2312.0 1976 64.3
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2306.6 1983 63.8
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2303.9 1828 68.1
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2302.3 2061 61.6
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2274.6 1979 62.9
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2269.6 2011 62.6
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2224.5 1982 62.5
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2219.1 1996 61.7
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2213.7 2000 62.5
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2212.6 1997 62.1
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2209.9 1993 62.5
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2207.9 2018 61.6
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2192.9 1976 62.0
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2187.1 2060 60.1
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2183.3 1999 61.0
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2171.0 1974 60.9
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2170.2 1993 61.9
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2162.1 1990 60.0
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2140.5 1658 69.7
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2136.7 2048 58.8
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2132.5 1985 58.9
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2131.3 1978 59.7
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2130.1 1980 59.8
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2125.5 1979 59.5
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2121.3 1970 59.7
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2119.0 1978 59.1
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2116.3 1975 60.1
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2114.7 1978 59.6
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2112.0 1997 59.2
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2095.1 1968 58.7
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2082.0 1984 59.3
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2075.4 1987 58.5
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2067.0 1973 58.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2062.3 1975 58.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2053.5 1997 58.0
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2043.9 2003 57.7
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2043.1 1982 56.3
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2040.0 1968 58.5
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2038.8 1975 58.8
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2038.1 1921 60.4
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2034.2 2002 57.8
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2030.4 1985 58.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2023.4 1972 57.8
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2020.4 1970 57.1
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2006.9 2140 55.5
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1977.6 1906 58.8
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1973.4 2007 57.2
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1945.2 1943 56.9
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1880.1 1780 59.2
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1795.0 1780 57.5
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1760.0 2017 51.3
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1733.8 1408 67.7
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1727.2 1648 58.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1700.3 1386 66.6
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1661.7 1738 56.1
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1661.0 1512 61.0
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1523.1 1256 63.9
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1519.6 2003 47.3
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1401.0 1918 44.9
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1346.3 1997 44.8
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1293.1 1201 61.2
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1291.6 1156 63.2
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1267.3 1621 46.3
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1177.5 1434 49.1
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 0.0e+00 1126.3 773 74.8
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1119.8 778 73.8
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 4.6e-307 1058.9 778 72.0
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 7.5e-273 945.3 1070 52.0
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.2e-268 929.9 991 52.6
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 8.0e-267 925.2 843 58.7
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.8e-258 897.5 1154 46.7
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 4.0e-250 869.8 2135 33.2
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.7e-237 827.8 1302 43.3
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.7e-229 801.2 2138 31.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 7.1e-207 726.1 1013 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 6.5e-184 649.8 1971 31.6
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 5.5e-183 646.7 670 56.7
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.9e-173 614.0 423 72.1
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 4.1e-170 604.0 1943 29.7
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 5.2e-157 560.5 600 51.8
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 9.4e-151 539.7 510 58.4
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.9e-143 515.4 320 79.4
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.4e-140 504.6 1597 30.2
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 3.5e-121 441.4 537 50.1
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.3e-120 438.7 779 40.4
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 1.6e-118 432.6 379 66.0
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 7.6e-108 397.1 318 68.9
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 5.4e-106 391.0 472 50.0
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.1e-88 331.3 289 62.6
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 4.8e-86 324.7 390 48.2
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 7.1e-82 310.8 241 68.5
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 8.2e-78 297.4 196 76.0
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 3.4e-76 292.0 333 49.8
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 8.2e-70 270.8 294 52.7
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.4e-69 270.0 293 53.9
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-62 244.6 1133 25.9
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.4e-60 238.8 187 65.2
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 2.9e-59 235.7 186 64.5
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 2.9e-59 235.7 358 47.8
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 1.1e-58 233.8 231 59.7
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.2e-57 230.3 431 40.4
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.5e-55 223.4 264 51.5
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 1.4e-53 216.9 328 45.1
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.4e-48 200.3 246 50.0
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.0e-44 186.4 332 37.0
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.1e-42 180.6 638 28.5
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 1.5e-42 180.3 106 82.1
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.9e-42 179.9 106 80.2
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 6.1e-41 174.9 107 76.6
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 4.5e-36 158.7 105 73.3
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.5e-34 151.8 101 68.3
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 2.3e-32 146.4 128 69.5
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 8.3e-30 137.9 100 69.0
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 8.3e-30 137.9 73 83.6
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 4.2e-26 125.6 433 32.3
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 5.2e-24 118.6 129 54.3
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 1.2e-23 117.5 111 63.1
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 1.2e-23 117.5 111 63.1
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 8.3e-22 111.3 122 59.8
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 5.4e-21 108.6 134 54.5
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 3.5e-20 105.9 108 55.6
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 2.9e-19 102.8 137 51.8
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.8e-16 93.6 77 62.3
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 5.2e-16 92.0 110 47.3
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 8.9e-16 91.3 67 67.2
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 4.9e-14 85.5 44 84.1
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 4.9e-14 85.5 44 84.1
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 8.3e-14 84.7 150 38.0
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.2e-12 80.9 163 37.4
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.2e-09 70.9 78 50.0
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.8e-08 67.0 92 42.4
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 1.5e-07 63.9 136 39.0
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 6.4e-06 58.5 49 65.3
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 8.3e-06 58.2 47 63.8


User provided reference genes

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