Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.6e-39 165.6 81 100.0
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.6e-39 165.6 81 100.0
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-23 112.8 91 64.8
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 6.6e-22 107.1 91 61.5
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 3.4e-18 94.7 91 58.2
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 2.2e-17 92.0 91 56.0
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.9e-17 91.7 93 54.8
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 4.9e-17 90.9 91 56.0
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 8.3e-17 90.1 90 56.7
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.4e-16 89.4 91 56.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.9e-16 89.0 91 54.9
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.9e-16 89.0 93 53.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.4e-16 88.6 91 56.0
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.4e-16 88.6 93 52.7
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 4.1e-16 87.8 94 52.1
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.1e-16 87.8 94 51.1
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 4.1e-16 87.8 91 51.6
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.4e-16 87.4 91 54.9
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 5.4e-16 87.4 91 54.9
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 5.4e-16 87.4 91 56.0
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 7.0e-16 87.0 91 56.0
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 7.0e-16 87.0 91 54.9
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.2e-15 86.3 91 53.8
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.6e-15 85.9 93 54.8
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.6e-15 85.9 95 50.5
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.0e-15 85.5 94 52.1
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.7e-15 85.1 94 53.2
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.5e-15 84.7 94 52.1
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 6.0e-15 84.0 91 52.7
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 6.0e-15 84.0 96 49.0
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.0e-14 83.2 91 54.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.0e-14 83.2 94 48.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 1.3e-14 82.8 91 48.4
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.3e-14 82.0 91 52.7
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 3.0e-14 81.6 94 50.0
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 3.9e-14 81.3 94 45.7
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 5.0e-14 80.9 91 51.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 6.6e-14 80.5 94 51.1
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 6.6e-14 80.5 96 49.0
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 6.6e-14 80.5 94 47.9
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 8.6e-14 80.1 94 50.0
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 8.6e-14 80.1 94 51.1
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.1e-13 79.7 94 50.0
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.1e-13 79.7 89 50.6
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.5e-13 79.3 94 50.0
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.9e-13 79.0 95 46.3
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.3e-13 77.8 89 49.4
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.3e-13 77.8 89 49.4
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.3e-13 77.8 89 49.4
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.3e-13 77.8 89 49.4
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 4.3e-13 77.8 94 48.9
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 4.3e-13 77.8 94 48.9
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 7.3e-13 77.0 94 46.8
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 9.5e-13 76.6 80 51.2
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 9.5e-13 76.6 89 48.3
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 9.5e-13 76.6 94 46.8
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 9.5e-13 76.6 94 46.8
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.2e-12 76.3 90 50.0
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-12 75.5 62 61.3
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 2.8e-12 75.1 94 45.7
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 2.8e-12 75.1 90 47.8
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.1e-11 73.2 62 59.7
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.1e-11 73.2 62 61.3
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.4e-11 72.8 94 46.8
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.4e-11 72.8 93 43.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.8e-11 72.4 62 59.7
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 2.3e-11 72.0 93 44.1
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.3e-11 72.0 80 48.8
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.3e-11 72.0 93 45.2
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.1e-11 71.6 62 56.5
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 4.0e-11 71.2 91 46.2
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 5.2e-11 70.9 80 47.5
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 5.2e-11 70.9 90 45.6
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 6.8e-11 70.5 93 43.0
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 6.8e-11 70.5 94 41.5
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 8.9e-11 70.1 62 54.8
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.5e-10 69.3 93 44.1
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.6e-10 68.6 94 46.8
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 3.4e-10 68.2 90 43.3
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 5.8e-10 67.4 91 42.9
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 7.5e-10 67.0 62 54.8
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.3e-09 66.2 91 41.8
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.3e-09 66.2 63 57.1
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.7e-09 65.9 91 40.7
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 2.2e-09 65.5 89 41.6
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.2e-09 65.5 77 50.6
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.2e-09 65.5 77 50.6
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 2.2e-09 65.5 91 40.7
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 2.2e-09 65.5 91 41.8
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.9e-09 65.1 93 44.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 4.9e-09 64.3 91 39.6
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 4.9e-09 64.3 91 39.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 4.9e-09 64.3 80 45.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 4.9e-09 64.3 91 40.7
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 6.4e-09 63.9 91 40.7
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 6.4e-09 63.9 91 39.6
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 6.4e-09 63.9 91 39.6
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.1e-08 63.2 62 50.0
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.9e-08 62.4 91 40.7
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 5.4e-08 60.8 93 37.6
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 9.2e-08 60.1 76 47.4
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 2.7e-07 58.5 94 38.3
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.0e-06 56.6 62 48.4
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.3e-06 56.2 90 38.9
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.7e-06 55.8 65 44.6


User provided reference genes

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