Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.6e-240 835.9 485 100.0
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.1e-193 680.2 479 86.4
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.3e-104 382.1 433 55.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 9.2e-103 378.3 429 55.9
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 3.5e-102 376.3 425 55.5
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.2e-86 324.7 440 49.3
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 5.2e-82 309.3 492 44.3
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 7.5e-81 305.4 438 48.6
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.2e-80 303.9 443 47.0
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 6.4e-80 302.4 425 47.3
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 2.7e-78 297.0 446 46.4
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 3.9e-77 293.1 439 47.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 6.8e-74 282.3 462 44.4
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.5e-73 281.2 405 46.2
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.5e-73 281.2 447 44.7
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.9e-72 276.9 428 45.8
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.1e-71 272.3 428 45.3
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 9.2e-71 271.9 485 41.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.3e-69 268.1 416 45.4
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.7e-69 267.7 444 43.5
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 6.6e-69 265.8 487 40.0
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.9e-68 264.2 424 42.2
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 7.3e-68 262.3 417 42.4
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.6e-67 260.0 486 40.1
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.1e-66 258.5 433 43.4
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 4.0e-66 256.5 429 43.8
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.0e-66 256.5 296 53.0
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 2.0e-65 254.2 430 40.5
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.0e-65 254.2 412 44.9
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.3e-64 251.5 409 43.0
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 2.2e-64 250.8 431 41.1
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.9e-63 247.7 410 44.6
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.2e-63 246.9 437 43.9
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 3.2e-63 246.9 427 41.7
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.2e-62 245.0 428 41.1
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.1e-62 244.2 437 43.7
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.1e-62 244.2 432 40.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.1e-62 244.2 419 42.2
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.0e-61 240.4 437 41.6
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.9e-60 237.7 415 40.2
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.9e-60 237.7 376 43.6
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 4.3e-60 236.5 381 43.6
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 4.3e-60 236.5 429 40.1
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 7.3e-60 235.7 382 41.6
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 9.6e-60 235.3 422 42.4
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.6e-59 234.6 396 42.4
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.6e-59 233.4 422 43.6
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 4.8e-59 233.0 433 39.0
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.4e-58 230.7 335 44.5
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 2.4e-58 230.7 443 40.2
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.0e-58 229.9 342 45.6
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 4.0e-58 229.9 437 38.9
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 4.0e-58 229.9 452 40.0
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 5.3e-58 229.6 385 39.7
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.3e-58 229.6 401 43.1
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 9.0e-58 228.8 394 41.9
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 9.0e-58 228.8 335 45.1
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 9.0e-58 228.8 445 41.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.2e-57 228.4 429 39.9
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.5e-57 228.0 434 39.4
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.6e-57 227.3 385 39.7
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.6e-57 227.3 441 40.4
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 9.9e-57 225.3 403 38.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.7e-56 224.6 407 42.0
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.9e-56 223.8 436 38.5
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.9e-56 223.8 427 39.8
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 4.9e-56 223.0 436 39.4
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 4.9e-56 223.0 474 36.5
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 5.4e-55 219.5 436 38.3
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.6e-54 218.0 414 39.6
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 6.7e-53 212.6 432 38.2
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.6e-52 209.5 282 46.1
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 7.4e-52 209.1 441 37.9
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.3e-51 208.4 416 39.9
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 3.7e-51 206.8 404 37.4
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.1e-50 205.3 395 39.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.4e-50 204.9 364 40.9
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.4e-50 204.9 364 40.9
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.4e-50 204.9 433 40.9
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.8e-50 204.5 452 35.6
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 3.1e-50 203.8 508 34.6
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 2.2e-48 197.6 331 40.5
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 4.9e-48 196.4 375 38.4
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 6.4e-48 196.1 426 36.4
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.5e-47 194.1 441 37.0
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.2e-47 193.7 330 41.8
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.6e-46 191.4 364 36.3
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.6e-46 191.4 374 37.7
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 3.5e-46 190.3 374 36.1
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.1e-45 186.4 365 38.9
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 3.3e-44 183.7 334 40.7
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.6e-43 181.4 433 35.3
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.7e-43 180.3 371 39.1
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.1e-42 178.7 396 36.1
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 2.4e-42 177.6 383 37.1
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 5.3e-42 176.4 341 37.8
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 4.9e-40 169.9 442 35.3
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 5.5e-39 166.4 418 34.0
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 5.5e-39 166.4 418 34.0
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 6.0e-38 162.9 369 35.2
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 7.9e-38 162.5 383 36.6
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 3.0e-37 160.6 219 48.4
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 6.7e-37 159.5 190 50.5
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 6.7e-37 159.5 229 45.0
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.4e-36 156.0 448 33.3
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.8e-35 154.1 437 31.6
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.8e-35 154.1 266 39.8
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 4.1e-34 150.2 284 41.2
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.5e-33 148.3 329 35.6
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.0e-33 147.9 383 35.5
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 2.0e-33 147.9 333 38.1
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 5.0e-32 143.3 333 35.7
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.9e-31 141.4 442 32.6
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 3.6e-30 137.1 422 32.2
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 6.1e-30 136.3 258 41.9
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.4e-29 135.2 380 33.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.7e-29 132.9 347 33.7
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 5.7e-28 129.8 337 33.2
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 2.8e-27 127.5 167 46.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-25 120.6 210 42.9
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.8e-24 117.1 153 45.8
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-23 115.5 275 34.2
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 3.2e-23 114.0 297 34.7
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.2e-23 113.6 204 49.5
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.3e-21 107.8 134 47.8
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 6.7e-21 106.3 150 42.0
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.7e-19 101.7 233 36.1
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.2e-19 101.3 280 32.9
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.9e-16 90.9 140 46.4
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 7.0e-10 69.7 163 35.6
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.0e-09 68.2 163 35.0
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-08 65.9 148 41.2
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 2.5e-07 61.2 69 50.7
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.2e-06 58.9 117 36.8


User provided reference genes

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