Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.0e-70 270.0 139 100.0
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.3e-53 211.5 141 82.3
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.3e-46 189.1 141 78.0
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 7.6e-26 120.9 141 55.3
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.9e-26 120.6 145 56.6
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 1.1e-19 100.5 137 48.9
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 5.2e-19 98.2 141 50.4
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.2e-17 92.8 140 47.9
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 3.8e-17 92.0 141 45.4
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 4.9e-17 91.7 148 44.6
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.4e-16 90.1 147 46.9
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 2.4e-16 89.4 139 45.3
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 4.2e-16 88.6 63 69.8
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.2e-16 88.6 63 69.8
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.4e-16 88.2 94 55.3
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 7.1e-16 87.8 138 46.4
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.6e-15 86.7 143 42.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.5e-15 85.5 94 54.3
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.0e-15 84.7 115 48.7
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.0e-15 84.7 94 53.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 7.8e-15 84.3 116 46.6
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.0e-14 84.0 137 45.3
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.3e-14 83.6 138 44.9
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.3e-14 82.8 170 42.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 5.1e-14 81.6 129 50.4
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 6.6e-14 81.3 140 44.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.1e-13 80.5 131 42.0
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.1e-13 80.5 131 42.0
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.9e-13 79.7 116 47.4
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.6e-13 78.2 136 38.2
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.6e-13 78.2 135 46.7
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 5.6e-13 78.2 133 42.9
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.3e-13 77.8 135 46.7
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 9.6e-13 77.4 139 39.6
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 9.6e-13 77.4 144 41.0
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.6e-12 76.6 135 46.7
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-12 76.6 135 45.2
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 2.1e-12 76.3 138 40.6
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.8e-12 75.9 56 67.9
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 3.6e-12 75.5 135 43.7
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 6.2e-12 74.7 59 67.8
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.8e-11 73.2 164 37.2
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.4e-11 72.8 61 62.3
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 3.1e-11 72.4 138 39.9
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 4.0e-11 72.0 70 61.4
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 4.0e-11 72.0 93 47.3
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 5.3e-11 71.6 151 38.4
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.9e-11 71.2 74 55.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.5e-10 70.1 65 63.1
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.5e-10 70.1 65 67.7
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 1.5e-10 70.1 64 59.4
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.0e-10 69.7 80 53.8
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.6e-10 69.3 139 41.0
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 2.6e-10 69.3 134 38.8
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 4.4e-10 68.6 142 38.7
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 4.4e-10 68.6 134 41.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.4e-10 68.6 122 45.1
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 5.8e-10 68.2 57 68.4
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 7.6e-10 67.8 65 60.0
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 9.9e-10 67.4 92 45.7
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.3e-09 67.0 59 59.3
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 1.3e-09 67.0 101 42.6
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.7e-09 66.6 132 42.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.2e-09 66.2 128 40.6
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.2e-09 66.2 138 39.1
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.9e-09 65.9 119 40.3
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.9e-09 65.9 128 39.1
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 2.9e-09 65.9 64 56.2
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 4.9e-09 65.1 144 37.5
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 4.9e-09 65.1 60 65.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 6.4e-09 64.7 136 40.4
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.4e-09 64.7 151 39.1
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 6.4e-09 64.7 125 36.8
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 8.4e-09 64.3 157 35.7
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 8.4e-09 64.3 133 36.8
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 8.4e-09 64.3 157 35.7
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 8.4e-09 64.3 129 37.2
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.4e-09 64.3 103 45.6
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 1.1e-08 63.9 57 61.4
SalBow6G5116 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.1e-08 63.9 106 41.5
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 1.1e-08 63.9 67 53.7
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.4e-08 63.5 129 35.7
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 1.9e-08 63.2 140 39.3
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 1.9e-08 63.2 50 68.0
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.9e-08 63.2 126 42.1
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.9e-08 63.2 44 79.5
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.4e-08 62.8 51 68.6
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.4e-08 62.8 144 37.5
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-08 62.8 74 54.1
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.2e-08 62.4 38 81.6
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 3.2e-08 62.4 113 43.4
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 4.2e-08 62.0 88 45.5
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 4.2e-08 62.0 128 36.7
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 4.2e-08 62.0 43 72.1
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 4.2e-08 62.0 56 58.9
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 5.4e-08 61.6 113 41.6
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 5.4e-08 61.6 140 39.3
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 7.1e-08 61.2 59 61.0
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 9.3e-08 60.8 109 42.2
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 9.3e-08 60.8 54 59.3
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.2e-07 60.5 46 71.7
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 1.6e-07 60.1 43 74.4
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 2.1e-07 59.7 52 67.3
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 2.1e-07 59.7 43 74.4
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 2.1e-07 59.7 40 75.0
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 2.7e-07 59.3 77 53.2
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.7e-07 59.3 42 71.4
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 2.7e-07 59.3 39 76.9
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 2.7e-07 59.3 43 69.8
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 2.7e-07 59.3 117 38.5
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.5e-07 58.9 128 35.2
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 3.5e-07 58.9 55 60.0
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.5e-07 58.9 133 36.1
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 3.5e-07 58.9 130 40.0
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 3.5e-07 58.9 104 44.2
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 3.5e-07 58.9 39 76.9
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.5e-07 58.9 146 34.2
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.6e-07 58.5 47 66.0
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 4.6e-07 58.5 50 64.0
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 4.6e-07 58.5 100 41.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 6.0e-07 58.2 44 72.7
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 6.0e-07 58.2 98 38.8
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 6.0e-07 58.2 43 67.4
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 6.0e-07 58.2 50 64.0
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 6.0e-07 58.2 55 60.0
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 7.9e-07 57.8 37 75.7
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.9e-07 57.8 71 50.7
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 7.9e-07 57.8 47 66.0
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.9e-07 57.8 47 66.0
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 7.9e-07 57.8 148 36.5
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 7.9e-07 57.8 39 74.4
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 7.9e-07 57.8 50 60.0
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.0e-06 57.4 143 35.7
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 1.0e-06 57.4 52 53.8
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 54 59.3
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.3e-06 57.0 127 34.6
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 1.3e-06 57.0 47 66.0
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.3e-06 57.0 135 34.8
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.3e-06 57.0 134 35.1
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.3e-06 57.0 118 39.0
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.7e-06 56.6 42 66.7
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.7e-06 56.6 39 69.2
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.7e-06 56.6 39 69.2
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 2.3e-06 56.2 150 34.7
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 2.3e-06 56.2 43 65.1
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 2.3e-06 56.2 100 40.0
Sed0020224 Sechium edule HOM05D009218 ORTHO05D010069 2.3e-06 56.2 118 41.5
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.0e-06 55.8 92 42.4
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 3.0e-06 55.8 39 74.4
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.0e-06 55.8 39 71.8
Zm00001eb015160 Zea mays HOM05D002974 ORTHO05D002992 3.0e-06 55.8 45 66.7
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.9e-06 55.5 48 64.6
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 3.9e-06 55.5 50 56.0
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 3.9e-06 55.5 39 66.7
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.1e-06 55.1 119 41.2
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.1e-06 55.1 47 61.7
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.1e-06 55.1 59 54.2
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.1e-06 55.1 59 54.2
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 6.6e-06 54.7 128 32.8
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 6.6e-06 54.7 36 72.2
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.6e-06 54.7 38 68.4
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 6.6e-06 54.7 52 59.6
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 6.6e-06 54.7 38 73.7
Potri.019G013300 Populus trichocarpa HOM05D011447 ORTHO05D010069 6.6e-06 54.7 104 41.3
Zm00001eb395660 Zea mays HOM05D002974 ORTHO05D002992 6.6e-06 54.7 43 67.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.7e-06 54.3 45 62.2
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 8.7e-06 54.3 63 52.4
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 8.7e-06 54.3 117 36.8
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 8.7e-06 54.3 51 54.9


User provided reference genes

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