Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.2e-126 455.7 231 100.0
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 7.4e-119 430.6 231 91.8
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 5.7e-95 351.3 217 77.9
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.4e-87 325.5 217 70.0
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.4e-85 320.1 213 72.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 5.9e-84 314.7 228 66.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 7.7e-84 314.3 213 70.4
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.3e-83 313.5 208 69.7
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 2.9e-83 312.4 215 67.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.9e-83 312.4 226 67.3
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.1e-82 310.5 212 68.9
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.9e-82 309.7 211 71.1
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.9e-82 309.7 230 65.7
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.2e-81 307.0 215 67.4
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 4.7e-81 305.1 212 67.9
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 6.1e-81 304.7 213 67.1
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.0e-79 299.7 201 69.7
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 4.4e-79 298.5 214 65.4
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.7e-78 296.6 218 63.3
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.7e-78 296.6 212 64.2
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 3.7e-78 295.4 215 64.7
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 6.3e-78 294.7 208 65.9
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.8e-77 293.1 213 62.9
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.1e-77 292.4 210 61.4
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 4.1e-77 292.0 197 66.0
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 4.1e-77 292.0 213 63.8
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 4.1e-77 292.0 215 62.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.2e-76 290.4 215 63.7
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.7e-76 289.3 230 60.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 3.5e-76 288.9 212 61.8
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 3.5e-76 288.9 216 62.0
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 4.5e-76 288.5 215 64.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.5e-76 288.5 205 65.4
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 4.5e-76 288.5 228 59.2
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 7.8e-76 287.7 210 62.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 7.8e-76 287.7 218 61.9
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.0e-75 287.3 215 63.3
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.0e-75 287.3 215 62.3
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.3e-75 286.2 215 64.7
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 5.0e-75 285.0 215 62.3
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.6e-75 284.6 218 59.2
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 6.6e-75 284.6 230 60.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 8.6e-75 284.3 213 63.8
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-74 283.9 227 61.2
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.5e-74 283.5 230 58.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.5e-74 283.5 215 60.9
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.9e-74 283.1 221 58.4
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.5e-74 282.7 229 59.0
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 5.6e-74 281.6 218 61.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.8e-73 279.3 215 61.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.1e-73 278.1 214 59.8
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.0e-73 277.7 220 59.1
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 8.0e-73 277.7 226 58.4
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.8e-72 276.6 192 65.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 3.0e-72 275.8 227 57.7
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 4.0e-72 275.4 218 60.1
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.2e-71 273.9 209 62.7
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.2e-71 273.9 216 56.9
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.2e-71 273.9 217 59.4
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.6e-71 272.7 211 59.2
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 7.5e-71 271.2 196 65.8
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-70 270.4 214 59.3
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-70 270.4 214 59.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.7e-70 270.0 210 61.0
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.7e-70 270.0 243 53.9
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 3.7e-70 268.9 214 59.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 3.2e-69 265.8 211 63.0
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 3.2e-69 265.8 179 72.6
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 4.1e-69 265.4 201 59.7
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.4e-69 265.0 228 56.1
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 7.0e-69 264.6 205 60.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 9.2e-69 264.2 214 57.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 9.2e-69 264.2 238 56.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.2e-68 263.8 214 58.4
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.7e-68 262.7 204 59.8
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.7e-68 262.7 225 56.9
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.7e-68 262.7 225 56.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.7e-68 262.7 228 55.3
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 6.0e-68 261.5 225 57.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.0e-68 261.5 225 57.3
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 7.8e-68 261.2 213 58.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-67 260.4 196 61.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.3e-67 260.4 213 61.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.0e-67 259.2 225 56.9
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.0e-67 258.5 234 55.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 5.0e-67 258.5 225 56.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.6e-66 255.0 227 55.5
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 5.6e-66 255.0 227 55.9
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 7.3e-66 254.6 226 56.6
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 9.5e-66 254.2 226 56.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-65 253.4 196 59.7
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.6e-65 252.3 212 56.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 8.0e-65 251.1 207 56.0
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.0e-65 251.1 203 56.2
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 4.0e-64 248.8 196 59.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.0e-63 246.5 207 60.9
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 3.4e-63 245.7 167 65.3
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.8e-63 245.0 188 59.0
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 9.8e-63 244.2 210 53.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.2e-62 243.0 236 52.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.1e-61 240.7 215 56.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.4e-61 240.4 204 53.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.4e-61 239.6 193 59.6
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.4e-61 239.6 203 54.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 3.2e-61 239.2 214 54.7
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.4e-61 238.4 225 55.6
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.1e-60 236.5 202 54.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.7e-60 236.1 174 63.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.7e-60 236.1 213 54.9
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 7.8e-60 234.6 206 56.8
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.9e-59 232.3 179 63.7
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 3.3e-58 229.2 185 54.1
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 5.6e-58 228.4 223 52.9
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.6e-57 226.9 187 53.5
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.5e-55 220.3 176 56.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 6.4e-54 214.9 162 63.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.3e-51 206.5 216 50.9
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.9e-51 205.7 256 48.8
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.9e-50 203.4 250 44.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.7e-49 198.7 236 45.8
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 8.1e-49 198.0 126 68.3
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.3e-46 190.7 234 46.2
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.9e-45 186.8 230 46.5
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 7.1e-45 184.9 234 44.0
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.2e-44 184.1 195 43.1
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 3.5e-44 182.6 138 68.8
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.5e-42 177.2 108 72.2
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 4.3e-42 175.6 130 56.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 4.7e-41 172.2 190 44.7
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.1e-40 169.5 108 71.3
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 2.6e-31 139.8 163 43.6
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.9e-26 123.6 111 55.9
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.6e-25 120.6 80 57.5
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.4e-23 112.8 70 64.3
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.5e-18 97.4 98 52.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.3e-17 94.4 85 50.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 8.2e-17 91.7 57 68.4
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.9e-16 88.6 98 51.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 9.0e-16 88.2 87 47.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-15 87.8 53 66.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.2e-15 87.8 98 51.0
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.6e-15 86.7 51 70.6
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.2e-14 83.6 64 54.7
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 8.4e-14 81.6 118 46.6
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.6e-12 77.4 50 72.0
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.5e-12 76.3 83 48.2
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.0e-11 73.2 53 66.0
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 4.3e-10 69.3 163 27.6
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 7.4e-10 68.6 125 32.8
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.6e-09 67.4 51 64.7
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.2e-09 67.0 39 64.1
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 4.8e-09 65.9 77 51.9
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.3e-06 57.8 45 51.1
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 8.5e-06 55.1 52 55.8


User provided reference genes

Program Settings