Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 2.4e-105 385.6 204 100.0
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.9e-74 282.3 195 76.9
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 3.5e-48 195.7 178 65.7
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 9.6e-46 187.6 186 60.8
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 2.2e-34 149.8 185 48.6
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.4e-33 147.1 203 48.3
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 9.4e-33 144.4 194 46.4
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 4.3e-30 135.6 196 41.8
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 7.4e-30 134.8 205 42.0
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 7.4e-30 134.8 201 43.8
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 2.2e-29 133.3 180 47.8
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 2.2e-29 133.3 205 42.9
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.4e-28 129.8 206 41.7
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 4.1e-28 129.0 195 42.6
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 9.1e-28 127.9 195 41.5
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.5e-27 125.6 202 40.6
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 1.0e-26 124.4 196 42.3
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.8e-26 122.5 201 40.8
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.5e-26 121.7 196 38.8
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 5.5e-25 118.6 205 42.4
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 7.2e-25 118.2 218 39.0
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 2.1e-24 116.7 179 43.6
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 6.1e-24 115.2 197 38.1
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 6.1e-24 115.2 203 35.0
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 6.1e-24 115.2 207 38.6
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.8e-23 113.6 202 37.6
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 3.0e-23 112.8 197 36.0
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 3.9e-23 112.5 204 42.2
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 5.2e-23 112.1 201 38.8
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 6.7e-23 111.7 186 38.7
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 2.0e-22 110.2 211 37.4
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 2.6e-22 109.8 207 35.7
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 4.4e-22 109.0 198 39.4
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 4.4e-22 109.0 218 34.9
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 5.7e-22 108.6 166 38.0
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 7.4e-22 108.2 191 37.7
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 9.7e-22 107.8 195 35.4
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 9.7e-22 107.8 202 36.1
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 9.7e-22 107.8 189 39.7
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.3e-21 107.5 208 35.1
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 1.7e-21 107.1 200 39.5
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 2.2e-21 106.7 225 33.3
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 3.7e-21 105.9 197 36.0
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 3.7e-21 105.9 194 33.5
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 4.8e-21 105.5 194 33.5
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 4.8e-21 105.5 156 38.5
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 4.8e-21 105.5 192 37.5
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 1.1e-20 104.4 159 38.4
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 1.1e-20 104.4 222 33.8
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 1.4e-20 104.0 159 38.4
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 1.4e-20 104.0 159 38.4
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 2.4e-20 103.2 159 37.7
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 4.1e-20 102.4 198 32.8
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 4.1e-20 102.4 156 38.5
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 4.1e-20 102.4 217 35.9
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 1.2e-19 100.9 195 31.8
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 1.6e-19 100.5 199 35.2
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 2.6e-19 99.8 186 36.0
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 3.5e-19 99.4 201 33.3
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 4.5e-19 99.0 197 35.0
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 4.5e-19 99.0 195 39.0
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 4.5e-19 99.0 197 32.5
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.9e-19 98.6 195 38.5
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.7e-18 97.1 163 39.9
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.7e-18 97.1 195 37.9
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.7e-18 97.1 195 36.9
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 3.8e-18 95.9 198 33.8
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 3.8e-18 95.9 196 32.7
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 3.8e-18 95.9 199 33.7
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 5.0e-18 95.5 110 48.2
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 5.0e-18 95.5 192 35.4
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 6.5e-18 95.1 211 34.1
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.1e-17 94.4 102 49.0
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.1e-17 94.4 102 49.0
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 1.5e-17 94.0 202 36.1
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.5e-17 94.0 193 38.3
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 1.9e-17 93.6 160 35.6
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.9e-17 93.6 136 42.6
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.5e-17 93.2 179 35.8
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 7.2e-17 91.7 172 35.5
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 7.2e-17 91.7 163 38.7
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 2.1e-16 90.1 193 32.1
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 2.7e-16 89.7 200 30.0
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 6.1e-16 88.6 137 38.7
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 8.0e-16 88.2 195 29.2
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 1.0e-15 87.8 89 51.7
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 3.0e-15 86.3 195 28.7
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 3.0e-15 86.3 166 36.1
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 5.2e-15 85.5 156 33.3
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 5.2e-15 85.5 125 36.0
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 5.2e-15 85.5 191 34.0
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 6.7e-15 85.1 186 34.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 6.7e-15 85.1 101 42.6
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 1.2e-14 84.3 192 31.8
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 3.3e-14 82.8 212 32.5
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 9.7e-14 81.3 174 33.9
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 2.8e-13 79.7 183 32.2
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 8.2e-13 78.2 158 32.3
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.8e-12 77.0 95 44.2
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 2.4e-12 76.6 148 39.9
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 3.1e-12 76.3 147 37.4
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 1.6e-11 73.9 190 32.6
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 2.0e-11 73.6 191 29.3
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 2.7e-11 73.2 188 31.4
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.2e-10 70.1 79 44.3
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 8.5e-10 68.2 194 30.4
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 5.5e-09 65.5 86 39.5
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 1.6e-08 63.9 187 29.4
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 1.0e-07 61.2 215 27.9
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 2.0e-06 57.0 149 30.2
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 5.7e-06 55.5 116 31.9


User provided reference genes

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