Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 1.5e-253 879.0 426 100.0
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 7.1e-176 620.9 426 75.1
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 5.7e-165 584.7 425 70.4
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 3.4e-146 522.3 436 64.9
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.1e-141 507.3 396 68.4
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.5e-141 506.9 429 64.1
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 2.0e-141 506.5 433 63.0
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 7.4e-141 504.6 432 62.5
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.7e-140 503.4 429 63.9
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 6.3e-140 501.5 428 63.8
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 1.8e-139 500.0 442 62.7
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 2.0e-138 496.5 437 61.6
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 2.6e-138 496.1 436 62.4
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 4.5e-138 495.4 429 62.2
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.0e-137 494.2 436 62.8
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.0e-137 494.2 441 63.0
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.3e-137 493.8 434 62.4
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 3.8e-137 492.3 437 60.6
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.8e-137 492.3 437 60.6
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 1.1e-136 490.7 444 61.5
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 1.1e-136 490.7 444 61.9
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 1.5e-136 490.3 445 60.7
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 4.2e-136 488.8 438 60.5
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 5.5e-136 488.4 432 62.7
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 7.2e-136 488.0 438 60.3
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 1.2e-135 487.3 442 61.5
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 1.6e-135 486.9 436 61.2
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 2.1e-135 486.5 444 60.6
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 3.6e-135 485.7 446 59.6
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 8.0e-135 484.6 441 60.5
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 1.4e-134 483.8 441 59.0
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 1.8e-134 483.4 429 60.8
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 1.8e-134 483.4 431 61.5
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 5.2e-134 481.9 432 60.4
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 6.7e-134 481.5 444 60.4
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 6.7e-134 481.5 444 60.4
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 1.5e-133 480.3 451 59.4
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 1.5e-133 480.3 442 61.1
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 2.0e-133 479.9 457 60.2
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 2.0e-133 479.9 457 60.2
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 2.2e-132 476.5 443 60.9
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 3.7e-132 475.7 437 60.0
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 4.8e-132 475.3 431 61.3
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 6.3e-132 474.9 436 59.9
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.4e-131 473.8 428 59.6
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 1.8e-131 473.4 443 56.4
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 2.4e-131 473.0 436 59.6
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.4e-131 473.0 428 59.3
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 3.1e-131 472.6 433 59.6
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 9.1e-131 471.1 442 57.2
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 1.2e-130 470.7 439 57.4
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.2e-130 470.7 432 60.0
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 1.2e-130 470.7 445 57.8
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.2e-130 470.7 440 58.0
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 2.0e-130 469.9 443 58.7
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 2.0e-130 469.9 446 57.0
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 3.5e-130 469.2 443 56.4
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 3.5e-130 469.2 443 56.4
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 5.9e-130 468.4 427 59.3
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 1.3e-129 467.2 439 58.5
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 1.7e-129 466.8 443 56.0
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.2e-129 466.5 430 59.8
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 5.0e-129 465.3 439 55.6
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 1.1e-128 464.2 435 56.6
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 1.1e-128 464.2 427 59.7
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.5e-128 463.8 430 59.3
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 7.2e-128 461.5 444 56.1
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 1.6e-127 460.3 444 56.1
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 1.6e-127 460.3 444 56.1
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 1.6e-127 460.3 426 58.5
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 3.6e-127 459.1 440 57.3
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 8.0e-127 458.0 426 58.0
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 1.0e-126 457.6 446 57.8
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 4.0e-126 455.7 425 58.1
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.2e-126 455.3 397 61.5
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 5.2e-126 455.3 455 55.8
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 6.8e-126 454.9 430 57.2
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 6.8e-126 454.9 427 58.8
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 1.2e-125 454.1 444 55.4
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 2.6e-125 453.0 426 57.7
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 4.4e-125 452.2 436 57.1
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 4.4e-125 452.2 436 57.1
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 2.2e-124 449.9 436 56.9
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 3.7e-124 449.1 438 58.4
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.6e-122 443.7 434 56.7
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 2.7e-122 443.0 428 58.9
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.0e-121 441.0 441 55.3
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 5.0e-121 438.7 428 57.2
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.1e-120 437.6 431 55.5
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 1.1e-120 437.6 410 60.2
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 8.0e-119 431.4 430 55.8
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 8.0e-119 431.4 428 55.8
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 8.9e-118 427.9 445 53.3
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 3.4e-117 426.0 430 55.6
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 5.7e-117 425.2 434 54.4
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 8.3e-116 421.4 406 57.9
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.4e-115 420.6 411 57.4
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 9.2e-115 417.9 281 76.9
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 1.1e-112 411.0 282 75.9
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 6.1e-111 405.2 427 52.9
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.8e-110 403.7 441 51.9
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 2.6e-109 399.8 450 51.8
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 2.6e-109 399.8 453 51.7
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 4.4e-109 399.1 402 54.2
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 9.8e-109 397.9 432 51.4
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.3e-108 397.5 427 52.0
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 1.3e-105 387.5 290 72.1
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 1.7e-105 387.1 441 49.0
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 2.0e-101 373.6 426 48.6
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 6.6e-97 358.6 411 49.9
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.1e-96 357.8 379 51.2
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.5e-96 357.5 428 48.1
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 5.8e-93 345.5 396 50.0
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.4e-91 340.9 436 47.2
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 1.2e-90 337.8 276 64.9
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 6.6e-89 332.0 309 58.3
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.5e-88 330.1 426 46.0
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.8e-86 323.9 384 47.9
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 3.1e-86 323.2 386 46.1
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 8.9e-86 321.6 276 60.5
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.9e-84 316.6 431 43.6
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.9e-84 316.6 276 61.2
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 6.4e-84 315.5 377 46.4
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 9.2e-83 311.6 364 48.1
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 1.2e-82 311.2 379 44.3
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.9e-59 234.2 235 54.0
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.2e-53 214.9 292 44.2
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.5e-50 203.4 208 52.9
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 8.7e-49 198.7 207 51.7
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 1.3e-44 184.9 179 57.5
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.6e-37 160.6 182 50.0
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 8.5e-36 155.6 134 65.7
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.6e-34 150.2 173 48.0
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 7.4e-32 142.5 105 71.4
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 5.3e-30 136.3 97 76.3
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 7.0e-30 136.0 136 52.9
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 1.9e-27 127.9 73 75.3
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 3.2e-27 127.1 73 75.3
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 3.2e-27 127.1 233 39.9
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.2e-26 125.2 155 47.7
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 8.8e-17 92.4 123 43.1
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 1.7e-12 78.2 43 83.7


User provided reference genes

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