Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 2251.1 1175 100.0
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1990.7 1175 89.7
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1916.4 1175 86.6
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1846.6 1179 82.0
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1762.3 1181 77.6
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1756.1 1182 77.5
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1752.6 1179 77.2
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1749.6 1179 77.4
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1749.2 1183 77.4
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1747.6 1078 85.0
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1746.1 1179 76.7
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1744.6 1189 76.9
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1743.4 1186 76.7
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1740.3 1184 76.6
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1739.9 1190 76.5
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1738.4 1191 76.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1734.5 1182 77.0
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1731.1 1182 76.2
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1730.7 1176 76.4
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1724.1 1177 75.8
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1724.1 1181 76.3
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1714.9 1193 75.2
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1713.7 1190 75.7
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1709.1 1178 75.0
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1708.7 1180 75.1
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1706.0 1179 75.3
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1704.9 1179 75.8
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1703.0 1176 74.6
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1702.6 1179 75.8
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1700.6 1176 74.4
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1699.9 1176 74.4
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1697.6 1176 74.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1692.9 1182 73.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1691.0 1183 74.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1687.2 1180 74.2
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1681.4 1186 74.0
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1675.6 1178 73.9
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1674.8 1186 73.9
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1674.4 1178 73.9
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1672.9 1176 73.2
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1671.4 1178 73.7
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1667.5 1153 74.5
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1649.4 1185 73.1
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1649.0 1183 72.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1634.4 1189 71.9
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1634.0 1176 71.7
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1633.6 1184 70.4
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1630.9 1190 71.3
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1629.8 1179 72.0
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1628.2 1187 71.1
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1624.0 1181 72.1
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1183 71.9
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1617.1 1180 71.3
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1616.3 1177 70.9
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1607.4 1188 69.9
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1607.0 1188 70.8
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1598.9 1184 69.8
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1593.2 1184 69.8
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1588.9 1189 69.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1588.5 1184 69.5
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1184 69.3
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1581.2 1182 69.2
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1581.2 1182 69.5
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1181 69.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1577.4 1179 69.7
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1577.4 1175 70.0
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1573.1 1183 69.9
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1572.8 1183 69.6
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1572.4 1182 70.1
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1571.6 1176 69.5
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1568.9 1183 69.4
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1568.1 1118 71.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1179 69.6
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1567.0 1183 69.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1567.0 1191 68.5
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1180 69.2
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1561.6 1061 78.0
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1558.9 1186 68.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1557.0 1180 68.8
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1556.2 1195 68.5
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1556.2 1195 68.5
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1550.4 1181 68.1
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1545.0 1178 68.5
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1544.3 1148 70.7
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1544.3 1180 68.7
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1540.8 1182 68.1
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1540.4 1182 68.1
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1539.6 1182 68.2
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1533.9 1181 67.5
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1531.5 1181 67.3
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1515.7 1189 67.1
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1505.3 1118 70.2
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1480.3 1125 67.6
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1475.3 1084 69.6
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1463.0 973 77.2
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1445.6 1184 64.9
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1426.0 1180 65.0
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1420.2 976 74.9
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1393.3 1175 63.1
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1387.5 1143 64.6
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1350.9 1168 60.8
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1323.5 1154 59.7
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1307.7 1169 57.7
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1295.0 934 71.3
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1290.8 941 69.9
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1242.3 874 74.7
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1133.6 986 62.0
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1107.0 843 70.7
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1086.2 1122 50.5
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 2.9e-304 1048.9 1128 48.6
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 5.2e-301 1038.1 669 78.3
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 2.2e-299 1032.7 1125 48.2
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.8e-293 1013.1 796 66.2
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 8.3e-291 1004.2 1117 47.7
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.9e-247 860.1 984 51.4
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.9e-242 843.6 654 68.8
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.0e-211 741.5 1138 39.8
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.0e-208 729.9 687 56.9
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 8.3e-158 562.4 424 71.5
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 4.1e-157 560.1 418 69.6
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 2.6e-143 514.2 431 64.7
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 9.6e-122 442.6 353 62.3
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 3.9e-99 367.5 317 60.9
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.0e-94 352.8 312 62.8
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.3e-89 335.9 1241 26.8
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 3.2e-85 321.2 363 49.6
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 4.4e-82 310.8 1203 26.6
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.8e-80 305.4 403 50.4
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.4e-64 252.7 322 49.7
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 1.7e-62 245.7 378 42.6
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 4.7e-36 157.9 100 85.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 8.9e-35 153.7 151 61.6
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.2e-31 143.3 640 22.7
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 7.3e-29 134.0 110 72.7
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 3.6e-28 131.7 92 79.3
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 3.1e-27 128.6 92 78.3
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 2.2e-25 122.5 69 81.2
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 6.4e-25 120.9 68 80.9
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 9.3e-08 63.9 51 74.5


User provided reference genes

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