Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 4.1e-94 348.2 197 100.0
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 7.8e-77 290.8 189 83.6
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.3e-55 220.3 186 72.6
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 9.0e-49 197.6 190 62.1
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.8e-47 192.2 194 61.3
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.9e-47 191.8 194 64.9
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.2e-46 189.1 195 59.0
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 3.2e-46 189.1 191 62.8
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 6.0e-45 184.9 193 62.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.8e-44 183.3 196 64.3
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.3e-44 183.0 192 57.8
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.7e-44 181.4 202 56.4
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 8.7e-44 181.0 202 56.9
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.3e-43 179.1 195 57.4
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 4.8e-42 175.3 197 56.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.3e-41 171.8 192 54.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 6.9e-41 171.4 191 56.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 9.0e-41 171.0 192 54.2
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.0e-40 169.9 194 54.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.3e-39 167.2 192 53.1
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.9e-39 166.0 197 54.8
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 8.4e-39 164.5 195 51.8
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 3.2e-38 162.5 209 50.7
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.7e-37 159.5 196 54.6
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.5e-37 159.1 197 54.3
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 4.6e-37 158.7 193 50.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 6.1e-37 158.3 192 52.1
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.3e-36 157.1 200 52.0
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.8e-36 156.8 190 50.5
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 2.3e-36 156.4 203 46.8
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.0e-36 156.0 211 46.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 3.0e-36 156.0 194 47.4
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 3.9e-36 155.6 196 51.5
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 5.1e-36 155.2 196 54.6
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.5e-35 153.7 195 47.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.5e-35 153.7 204 48.0
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.9e-35 153.3 196 52.6
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-35 152.9 192 51.0
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 7.4e-35 151.4 200 51.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-34 150.6 189 50.8
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-34 150.2 189 49.7
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.6e-34 150.2 192 48.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.2e-34 149.8 189 50.8
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.8e-34 149.4 192 49.5
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-34 149.4 192 49.5
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.8e-34 149.4 192 49.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-34 149.1 196 52.6
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.7e-34 149.1 196 52.6
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.8e-34 148.7 192 50.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 6.3e-34 148.3 192 50.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.3e-34 148.3 193 56.0
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.3e-34 148.3 193 56.0
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-33 147.5 192 49.5
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-33 147.5 196 52.0
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.4e-33 147.1 180 53.9
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.4e-33 147.1 189 47.6
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.8e-33 146.7 205 46.3
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.1e-33 146.0 195 51.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.9e-33 144.8 192 50.0
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 2.0e-32 143.3 199 47.7
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.6e-32 142.9 193 48.7
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.6e-32 142.9 197 48.2
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.5e-32 142.1 193 55.4
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 5.9e-32 141.7 203 51.7
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.0e-31 141.0 209 45.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.3e-31 140.6 192 46.9
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.3e-31 140.6 193 47.7
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.7e-31 140.2 198 50.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-31 140.2 203 48.3
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.7e-31 140.2 208 46.6
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.2e-31 139.8 192 45.3
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.8e-31 139.0 189 48.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.8e-31 139.0 201 45.8
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 6.5e-31 138.3 203 44.8
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.5e-31 138.3 203 49.3
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 8.5e-31 137.9 211 47.4
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.5e-31 137.9 207 48.3
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-30 137.5 202 48.0
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.4e-30 137.1 212 45.3
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-30 136.7 189 48.1
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.9e-30 136.7 204 43.1
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.2e-30 135.6 169 47.9
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 4.2e-30 135.6 196 46.9
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 4.2e-30 135.6 177 50.8
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 4.2e-30 135.6 197 46.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 9.4e-30 134.4 208 52.9
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.2e-29 134.0 191 47.1
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.2e-29 134.0 203 45.3
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.2e-29 134.0 193 47.2
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 6.1e-29 131.7 218 39.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-28 131.0 186 47.3
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.4e-28 130.6 216 44.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.4e-28 130.6 191 48.7
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.0e-28 129.4 190 46.3
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.1e-27 127.5 205 43.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.0e-27 126.7 180 48.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.5e-27 126.3 200 43.5
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.3e-27 125.9 206 39.8
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.7e-26 123.6 193 46.1
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.2e-26 123.2 209 43.5
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.8e-26 122.9 203 48.3
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.7e-26 122.5 188 44.7
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 4.8e-26 122.1 200 43.0
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 6.3e-26 121.7 204 40.2
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 6.3e-26 121.7 203 46.8
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 8.2e-26 121.3 200 41.5
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.1e-25 120.9 200 44.0
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.8e-25 120.2 190 41.6
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.4e-25 119.8 200 43.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.3e-25 118.6 169 45.0
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.2e-24 117.5 211 43.6
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.5e-24 117.1 192 43.8
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-24 116.7 169 45.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.0e-24 116.7 160 48.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.6e-24 116.3 188 43.1
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.6e-24 116.3 162 46.9
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.9e-24 115.2 203 39.4
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 3.8e-23 112.5 201 42.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 5.0e-23 112.1 199 42.7
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 8.5e-23 111.3 205 41.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.4e-22 110.5 203 40.9
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.5e-22 109.8 197 38.1
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 3.2e-22 109.4 217 40.1
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.2e-22 109.4 115 53.9
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 7.2e-22 108.2 191 46.1
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.6e-21 107.1 208 44.7
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-21 106.7 238 35.7
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 7.9e-21 104.8 191 42.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 7.9e-21 104.8 229 36.7
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-20 104.0 187 41.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-20 102.8 188 38.3
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.9e-20 102.4 191 43.5
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-20 102.4 188 42.6
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-20 102.4 188 42.6
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.9e-20 102.4 188 42.6
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.1e-20 102.1 180 38.3
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.1e-19 100.9 241 36.9
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-19 100.9 205 34.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.4e-19 99.0 71 74.6
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.3e-18 97.4 182 44.5
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.3e-18 97.4 192 40.6
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.7e-18 97.1 213 35.2
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.3e-18 95.1 155 43.9
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.2e-18 94.7 195 37.9
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.2e-18 94.7 178 43.3
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.4e-17 94.0 180 41.1
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.8e-17 93.6 70 70.0
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 7.0e-17 91.7 200 37.5
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-16 90.9 164 42.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.2e-16 90.9 164 42.1
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-16 90.1 169 39.1
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 2.0e-16 90.1 169 39.1
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.0e-16 90.1 189 34.4
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.0e-16 90.1 192 39.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 5.9e-16 88.6 68 64.7
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.0e-15 87.8 191 33.5
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-15 87.0 170 40.6
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 8.5e-15 84.7 95 53.7
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.9e-14 83.6 231 32.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.2e-14 82.8 186 36.0
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.2e-14 82.4 79 57.0
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.1e-13 80.1 155 41.3
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.7e-13 79.7 171 45.0
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 8.0e-13 78.2 189 33.9
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.4e-12 77.4 189 37.6
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.1e-09 67.8 203 34.0
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.0e-09 65.1 55 58.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 9.1e-09 64.7 55 58.2
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.5e-08 62.8 55 56.4
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.2e-07 60.1 53 56.6
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 2.9e-07 59.7 192 30.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 3.8e-07 59.3 186 28.0
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 8.5e-07 58.2 111 39.6
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 5.5e-06 55.5 161 29.8
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 5.5e-06 55.5 179 25.7


User provided reference genes

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