Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 6.0e-233 810.4 404 100.0
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 1.3e-219 766.1 389 98.2
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 2.6e-188 662.1 376 86.7
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 5.0e-187 657.9 381 86.6
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 8.5e-187 657.1 374 87.4
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 1.0e-184 650.2 368 87.0
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 2.0e-183 646.0 382 83.0
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 3.3e-183 645.2 383 83.8
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 4.4e-183 644.8 370 85.4
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 4.4e-183 644.8 370 84.9
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.4e-183 644.8 374 85.6
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 9.7e-183 643.7 374 85.3
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 9.7e-183 643.7 387 82.4
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.3e-182 643.3 396 82.1
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 2.8e-182 642.1 386 83.2
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.1e-181 640.2 382 81.2
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 1.4e-181 639.8 370 84.6
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 1.8e-181 639.4 370 85.1
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 2.4e-181 639.0 368 84.5
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.1e-181 638.6 368 84.5
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 3.1e-181 638.6 379 83.1
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 4.1e-181 638.3 408 78.7
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 7.0e-181 637.5 404 79.7
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 9.1e-181 637.1 368 85.9
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 9.1e-181 637.1 367 85.0
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.6e-180 636.3 370 83.2
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 7.7e-180 634.0 370 83.8
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.0e-179 633.6 377 82.8
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 1.7e-179 632.9 376 83.5
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 2.5e-178 629.0 390 79.5
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 3.2e-178 628.6 385 81.3
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 9.4e-178 627.1 413 77.7
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 1.2e-177 626.7 366 83.3
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 2.7e-177 625.5 369 82.1
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.6e-177 625.2 388 79.6
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 1.8e-176 622.9 388 79.9
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 3.0e-176 622.1 366 82.8
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 4.0e-176 621.7 344 87.5
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 4.0e-176 621.7 364 82.4
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 5.2e-176 621.3 368 85.1
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 5.2e-176 621.3 354 84.7
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 5.2e-176 621.3 370 81.4
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 8.8e-176 620.5 344 86.3
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 2.0e-175 619.4 366 82.5
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 2.6e-175 619.0 416 76.2
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 3.4e-175 618.6 372 80.9
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 4.4e-175 618.2 388 79.4
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 9.8e-175 617.1 374 80.5
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 9.8e-175 617.1 366 81.4
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.7e-174 616.3 410 76.1
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 2.8e-174 615.5 344 86.3
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 8.3e-174 614.0 374 78.9
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.1e-173 613.6 408 75.5
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 1.4e-173 613.2 362 81.8
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 1.8e-173 612.8 357 84.6
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 4.1e-173 611.7 400 77.2
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 5.4e-173 611.3 343 84.8
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 1.6e-172 609.8 365 80.5
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 1.3e-171 606.7 368 79.9
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.3e-171 606.7 368 80.2
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.3e-171 605.9 353 85.0
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 9.5e-170 600.5 339 85.3
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 2.8e-169 599.0 364 80.5
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 2.0e-167 592.8 363 79.3
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 4.4e-167 591.7 366 80.1
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 5.7e-167 591.3 381 76.4
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 9.8e-167 590.5 368 79.6
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 8.3e-166 587.4 363 78.2
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 8.3e-166 587.4 363 78.2
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.4e-165 586.6 396 74.2
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 1.2e-164 583.6 363 78.2
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 2.0e-164 582.8 363 78.2
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 2.0e-164 582.8 363 78.2
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 1.0e-163 580.5 363 78.0
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.9e-162 576.2 367 76.6
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 4.3e-162 575.1 354 78.8
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 1.6e-161 573.2 325 87.1
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 4.7e-161 571.6 393 71.5
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 1.8e-160 569.7 407 69.5
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 5.2e-160 568.2 343 80.2
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 2.0e-159 566.2 347 78.7
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 2.0e-159 566.2 395 70.9
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 9.8e-159 563.9 400 74.5
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 2.9e-158 562.4 399 69.9
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 2.4e-157 559.3 372 77.2
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 2.0e-156 556.2 364 76.6
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.7e-155 553.1 377 72.4
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 5.0e-155 551.6 378 74.1
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 8.6e-155 550.8 330 80.3
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 2.5e-154 549.3 363 74.7
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.2e-153 547.0 322 82.6
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 6.8e-152 541.2 346 73.7
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.7e-150 536.6 299 88.0
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 6.4e-150 534.6 367 73.0
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.9e-149 533.1 395 69.4
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 1.9e-149 533.1 357 71.4
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 7.3e-146 521.2 379 69.4
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 2.1e-145 519.6 374 73.0
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 1.2e-143 513.8 330 80.3
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 3.4e-143 512.3 360 68.9
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 7.8e-140 501.1 271 89.3
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 9.5e-138 494.2 351 68.7
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 4.7e-137 491.9 346 72.8
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 1.4e-136 490.3 386 66.1
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 1.6e-132 476.9 377 66.8
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.3e-131 473.8 352 64.5
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.7e-123 446.8 254 84.3
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 3.9e-123 445.7 353 62.0
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 8.7e-123 444.5 256 84.8
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 1.1e-122 444.1 343 61.8
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.1e-104 384.4 213 88.3
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 2.9e-94 349.7 203 81.3
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 7.9e-92 341.7 207 80.7
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 2.8e-89 333.2 212 77.8
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.8e-80 303.9 204 71.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 5.3e-64 249.2 275 49.1
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 3.6e-52 209.9 380 36.3
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 2.8e-49 200.3 123 86.2
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 8.9e-43 178.7 246 43.1
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.9e-41 173.7 214 46.3
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 5.2e-35 152.9 101 69.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 3.7e-33 146.7 85 78.8
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 8.1e-28 129.0 74 83.8
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 6.8e-27 125.9 165 44.2
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 8.3e-25 119.0 74 74.3
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 4.7e-20 103.2 81 60.5
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.1e-19 100.5 81 59.3
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.8e-18 96.3 74 70.3
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.9e-14 83.6 44 84.1
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 4.3e-13 80.1 100 44.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 6.2e-12 76.3 110 47.3
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 2.6e-10 70.9 93 44.1
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 5.4e-08 63.2 37 75.7
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 9.3e-08 62.4 48 62.5


User provided reference genes

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