Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.5e-35 151.4 93 100.0
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 3.2e-20 101.7 56 96.4
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 2.8e-16 88.6 58 84.5
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 6.8e-15 84.0 58 79.3
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 7.6e-14 80.5 55 78.2
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 9.9e-14 80.1 58 74.1
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 4.9e-13 77.8 79 59.5
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.1e-12 76.6 58 74.1
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 1.1e-12 76.6 58 72.4
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 1.4e-12 76.3 56 73.2
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.4e-12 76.3 56 73.2
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 1.4e-12 76.3 56 73.2
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 1.4e-12 76.3 51 78.4
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 1.9e-12 75.9 58 77.6
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.9e-12 75.9 57 70.2
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 5.4e-12 74.3 58 70.7
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 7.1e-12 73.9 56 71.4
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 7.1e-12 73.9 50 80.0
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 7.1e-12 73.9 50 80.0
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 7.1e-12 73.9 50 80.0
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 7.1e-12 73.9 50 80.0
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 7.1e-12 73.9 50 80.0
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 9.3e-12 73.6 48 81.2
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 9.3e-12 73.6 57 68.4
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 9.3e-12 73.6 49 79.6
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.6e-11 72.8 56 69.6
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 1.6e-11 72.8 51 78.4
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.6e-11 72.8 57 71.9
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 2.1e-11 72.4 56 71.4
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 2.7e-11 72.0 51 74.5
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 3.5e-11 71.6 54 72.2
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 3.5e-11 71.6 54 72.2
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 3.5e-11 71.6 48 79.2
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 3.5e-11 71.6 57 64.9
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 3.5e-11 71.6 48 79.2
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 6.0e-11 70.9 50 76.0
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 6.0e-11 70.9 49 75.5
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 7.8e-11 70.5 58 74.1
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 7.8e-11 70.5 48 79.2
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.0e-10 70.1 54 70.4
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.0e-10 70.1 59 69.5
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.0e-10 70.1 58 67.2
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 1.3e-10 69.7 56 67.9
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 1.7e-10 69.3 55 69.1
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 1.7e-10 69.3 48 79.2
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 2.3e-10 68.9 58 65.5
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 2.3e-10 68.9 58 65.5
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 3.0e-10 68.6 58 69.0
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 3.9e-10 68.2 58 65.5
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 3.9e-10 68.2 48 77.1
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 5.1e-10 67.8 51 74.5
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 5.1e-10 67.8 57 68.4
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 6.6e-10 67.4 60 66.7
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 1.1e-09 66.6 55 72.7
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.5e-09 66.2 58 65.5
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.5e-09 66.2 58 65.5
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 1.5e-09 66.2 58 63.8
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 1.5e-09 66.2 58 63.8
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.5e-09 66.2 48 72.9
Sabra10G0072900 Salix brachista HOM05D024558 ORTHO05D007696 1.5e-09 66.2 57 59.6
Sabra15G0035800 Salix brachista HOM05D024558 ORTHO05D007696 2.5e-09 65.5 38 84.2
Sabra17G0001100 Salix brachista HOM05D024558 ORTHO05D007696 2.5e-09 65.5 38 84.2
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 3.3e-09 65.1 54 64.8
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 3.3e-09 65.1 47 76.6
Sabra13G0047000 Salix brachista HOM05D024558 ORTHO05D007696 3.3e-09 65.1 38 84.2
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 4.3e-09 64.7 61 65.6
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 4.3e-09 64.7 50 70.0
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 4.3e-09 64.7 50 70.0
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 4.3e-09 64.7 47 74.5
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 5.6e-09 64.3 51 72.5
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 5.6e-09 64.3 49 65.3
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 5.6e-09 64.3 55 69.1
Sabra16G0103500 Salix brachista HOM05D024558 ORTHO05D007696 7.3e-09 63.9 38 81.6
Sabra19G0001200 Salix brachista HOM05D000340 ORTHO05D000677 7.3e-09 63.9 38 81.6
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 9.6e-09 63.5 50 66.0
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 9.6e-09 63.5 58 72.4
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 9.6e-09 63.5 58 72.4
Sabra15G0036100 Salix brachista HOM05D006797 ORTHO05D007696 1.3e-08 63.2 48 72.9
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 1.6e-08 62.8 49 63.3
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 2.1e-08 62.4 58 70.7
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 2.1e-08 62.4 58 70.7
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 2.8e-08 62.0 50 72.0
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 3.6e-08 61.6 56 58.9
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 3.6e-08 61.6 58 65.5
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 6.2e-08 60.8 57 68.4
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 8.1e-08 60.5 79 48.1
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.1e-07 60.1 58 67.2
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.1e-07 60.1 47 68.1
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 1.8e-07 59.3 58 60.3
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.8e-07 59.3 50 68.0
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 2.4e-07 58.9 63 60.3
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 2.4e-07 58.9 63 60.3
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 3.1e-07 58.5 48 64.6
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 3.1e-07 58.5 58 56.9
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 3.1e-07 58.5 58 56.9
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 4.0e-07 58.2 48 64.6
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 5.3e-07 57.8 63 60.3
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 5.3e-07 57.8 63 60.3
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 9.0e-07 57.0 58 65.5
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 9.0e-07 57.0 58 55.2
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 1.5e-06 56.2 62 58.1
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 1.5e-06 56.2 62 58.1
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 1.5e-06 56.2 62 58.1
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 2.0e-06 55.8 62 58.1
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 2.0e-06 55.8 62 58.1
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 2.6e-06 55.5 55 61.8
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 3.4e-06 55.1 62 56.5
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 3.4e-06 55.1 62 56.5
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 3.4e-06 55.1 62 56.5
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 3.4e-06 55.1 63 55.6
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 4.4e-06 54.7 55 60.0
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 4.4e-06 54.7 62 56.5
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 4.4e-06 54.7 62 56.5
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 4.4e-06 54.7 45 66.7
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 7.6e-06 53.9 63 57.1
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 7.6e-06 53.9 55 60.0
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 7.6e-06 53.9 62 54.8


User provided reference genes

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