Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.5e-258 895.2 538 100.0
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.1e-200 703.7 543 85.5
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.4e-151 539.3 498 74.1
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.3e-150 537.3 543 70.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 9.4e-149 531.2 489 74.2
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.8e-147 526.9 498 73.7
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.3e-147 526.6 541 67.8
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 9.7e-146 521.2 556 66.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.1e-144 516.2 552 64.9
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.0e-144 515.0 547 68.2
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-143 513.8 547 68.4
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 3.5e-143 512.7 577 61.2
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 3.8e-142 509.2 536 68.5
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 5.0e-142 508.8 559 60.3
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.9e-141 506.9 473 67.4
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.9e-141 506.9 464 73.5
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 7.2e-141 505.0 491 70.1
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 2.7e-140 503.1 501 65.7
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 4.7e-140 502.3 488 66.2
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 6.1e-140 501.9 539 62.3
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 3.0e-139 499.6 555 61.6
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 3.9e-139 499.2 501 65.7
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.2e-139 498.8 579 59.8
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 5.2e-139 498.8 558 64.3
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 8.8e-139 498.0 530 67.0
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.0e-138 496.9 565 60.2
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.6e-138 496.5 514 64.4
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 2.6e-138 496.5 543 61.3
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 7.4e-138 495.0 563 64.1
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 7.4e-138 495.0 569 62.0
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 7.4e-138 495.0 513 64.5
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 9.7e-138 494.6 553 60.9
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 9.7e-138 494.6 460 69.6
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.7e-138 494.6 516 68.8
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.7e-137 493.8 484 69.8
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.1e-136 491.1 493 69.0
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.1e-136 491.1 481 66.1
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.8e-136 490.3 516 68.0
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-136 490.0 516 68.4
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 5.3e-136 488.8 488 66.0
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.6e-135 487.3 560 64.8
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.6e-135 487.3 509 68.0
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.6e-135 486.5 494 68.8
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.9e-135 485.3 503 68.0
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.9e-135 485.3 509 67.6
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 5.9e-135 485.3 430 76.5
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.0e-134 484.6 493 69.6
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.3e-134 484.2 503 63.2
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.9e-134 483.0 532 65.8
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 2.9e-134 483.0 507 66.1
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.8e-134 482.6 588 58.2
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 5.0e-134 482.3 575 59.5
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 6.5e-134 481.9 562 64.8
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 8.5e-134 481.5 492 66.7
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 8.5e-134 481.5 492 66.7
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.1e-133 481.1 532 64.7
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-133 481.1 512 57.8
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.1e-133 481.1 494 68.8
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.5e-133 480.7 436 69.0
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 5.5e-133 478.8 503 62.8
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.2e-133 478.4 514 67.5
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 7.2e-133 478.4 551 64.1
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 7.2e-133 478.4 515 67.2
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 9.4e-133 478.0 487 67.6
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 9.4e-133 478.0 462 67.3
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.2e-132 477.6 488 61.9
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.6e-132 477.2 552 63.4
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 2.7e-132 476.5 487 66.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 6.1e-132 475.3 552 64.9
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 6.1e-132 475.3 518 66.0
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.1e-132 475.3 568 62.3
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 8.0e-132 474.9 582 57.7
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-131 474.6 484 66.7
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.0e-131 474.6 484 66.7
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.0e-131 473.0 557 63.9
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 6.8e-131 471.9 598 58.2
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-130 471.1 555 63.8
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.2e-130 471.1 564 63.5
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 1.2e-130 471.1 527 65.1
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.5e-130 470.7 579 60.4
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.6e-130 469.9 582 60.5
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.3e-129 467.6 531 61.4
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.8e-129 466.5 583 59.9
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 3.1e-128 463.0 632 50.3
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.0e-128 461.8 572 61.9
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 9.1e-128 461.5 506 67.2
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.6e-127 460.7 511 59.9
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-126 458.0 548 63.7
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.1e-124 450.3 496 61.5
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 6.1e-124 448.7 437 66.1
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.4e-123 447.6 538 57.8
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 2.3e-123 446.8 618 49.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 2.3e-123 446.8 566 59.9
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 3.0e-123 446.4 560 57.0
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 4.0e-123 446.0 540 62.6
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.7e-121 440.7 416 66.1
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 2.8e-121 439.9 518 64.9
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 3.5e-119 433.0 391 66.0
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.9e-118 429.9 493 60.0
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.5e-117 427.6 498 64.1
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 5.5e-117 425.6 470 61.9
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.2e-116 424.5 500 58.6
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.3e-115 420.2 530 61.3
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 2.6e-114 416.8 525 51.4
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.7e-114 415.6 497 62.6
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 4.6e-111 406.0 516 53.9
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.7e-110 404.1 498 60.8
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 5.0e-110 402.5 481 62.4
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 3.3e-109 399.8 524 59.4
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 3.3e-109 399.8 535 54.8
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 6.2e-108 395.6 445 68.5
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 4.6e-103 379.4 452 63.3
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-100 371.3 539 57.7
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.5e-98 364.4 501 53.1
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.1e-96 356.3 461 55.7
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 7.1e-96 355.5 448 56.7
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.7e-95 353.6 587 45.0
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 5.8e-90 335.9 494 55.5
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 6.6e-86 322.4 367 58.9
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.8e-84 317.0 468 53.0
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 2.2e-81 307.4 379 64.6
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.4e-80 303.9 376 67.0
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.0e-78 298.5 480 48.5
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 5.1e-78 296.2 601 44.4
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.6e-77 292.7 384 55.7
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.9e-72 277.7 306 72.5
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 8.7e-70 268.9 314 49.7
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 3.1e-67 260.4 277 56.7
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.2e-65 254.2 545 44.0
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 5.1e-62 243.0 510 42.4
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.3e-49 201.8 169 62.1
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.4e-49 199.1 132 70.5
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.5e-48 197.6 132 69.7
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-48 196.8 132 69.7
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 9.3e-48 195.7 436 34.9
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-41 174.9 126 65.9
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.5e-41 172.9 126 65.9
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-39 168.7 185 52.4
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 6.7e-38 162.9 166 56.6
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.7e-36 157.1 217 47.9
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.1e-35 152.5 119 63.9
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-34 152.1 163 52.1
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.4e-34 150.6 87 86.2
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-27 127.9 74 79.7
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.1e-27 127.1 106 60.4
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 6.5e-25 119.8 91 64.8
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 8.5e-17 92.8 56 76.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 6.8e-14 83.2 485 22.3
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.2e-10 72.4 56 67.9
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.0e-09 69.3 244 29.1
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.0e-09 67.0 106 42.5
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.5e-09 66.2 45 68.9
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.1e-08 65.9 69 55.1
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 2.1e-07 61.6 69 52.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.6e-07 60.8 124 35.5


User provided reference genes

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