Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.7e-146 521.9 258 100.0
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 4.2e-123 444.9 258 88.0
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.3e-107 392.1 263 76.4
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.6e-106 388.7 250 78.8
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 7.5e-96 354.4 247 70.4
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.7e-92 343.2 256 67.6
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.0e-92 342.4 256 68.8
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 6.8e-89 331.3 259 66.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.8e-89 331.3 256 64.8
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.4e-88 328.6 255 67.1
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 9.9e-88 327.4 255 66.7
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.4e-86 323.6 254 63.8
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 3.2e-86 322.4 256 64.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.1e-85 319.7 262 64.9
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-84 317.0 265 61.9
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.7e-84 316.6 258 63.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 2.3e-84 316.2 248 66.1
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.0e-84 315.8 258 62.4
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.0e-84 315.8 255 63.9
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.9e-84 315.5 247 66.0
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 5.1e-84 315.1 252 63.9
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 6.6e-84 314.7 220 71.4
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.5e-83 313.5 252 63.5
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.3e-83 312.0 254 61.4
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 9.6e-83 310.8 261 61.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 9.6e-83 310.8 262 63.0
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 2.1e-82 309.7 259 63.7
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 2.8e-82 309.3 255 62.4
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.7e-82 308.5 257 62.6
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 6.2e-82 308.1 258 61.6
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.1e-81 307.4 253 63.2
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.1e-81 307.4 259 61.0
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.4e-81 307.0 245 63.7
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.1e-81 305.8 259 64.5
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.0e-81 305.4 254 59.8
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.2e-81 305.1 254 61.8
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.2e-81 305.1 254 61.8
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.2e-81 305.1 254 59.8
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 6.8e-81 304.7 258 64.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 6.8e-81 304.7 249 62.7
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.0e-80 303.1 245 63.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 3.4e-80 302.4 257 62.6
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 5.8e-80 301.6 258 62.0
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 7.6e-80 301.2 259 59.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 9.9e-80 300.8 220 68.2
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-79 300.4 267 59.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.3e-79 300.4 257 62.3
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.7e-79 300.1 253 62.8
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 2.2e-79 299.7 253 61.3
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.8e-79 298.9 261 60.9
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 4.9e-79 298.5 258 62.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 4.9e-79 298.5 258 62.0
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 6.4e-79 298.1 260 62.7
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 6.4e-79 298.1 256 60.9
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.1e-78 297.4 247 61.5
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 3.2e-78 295.8 262 61.8
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 3.2e-78 295.8 262 61.8
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 5.4e-78 295.0 258 60.5
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 9.3e-78 294.3 254 60.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 9.3e-78 294.3 254 60.6
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.1e-77 293.1 250 61.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.3e-76 290.4 213 69.0
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 5.1e-76 288.5 258 60.1
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 8.7e-76 287.7 252 60.3
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.5e-75 286.2 263 59.7
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.3e-75 285.8 248 57.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 5.6e-75 285.0 258 58.9
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 7.3e-75 284.6 220 65.0
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 7.3e-75 284.6 220 66.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 9.6e-75 284.3 248 58.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.3e-74 283.9 258 57.8
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.6e-74 283.5 254 56.7
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 3.6e-74 282.3 245 61.6
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 4.8e-74 282.0 243 59.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 8.1e-74 281.2 257 57.6
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 8.1e-74 281.2 258 57.4
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 8.1e-74 281.2 245 61.6
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.3e-73 278.5 252 57.9
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 5.3e-73 278.5 253 61.3
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 6.9e-73 278.1 255 57.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-72 276.9 196 71.4
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 2.0e-72 276.6 245 59.6
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.0e-72 276.6 284 53.2
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.6e-72 276.2 275 56.4
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 5.8e-72 275.0 262 56.5
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 9.9e-72 274.2 252 57.5
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 6.4e-71 271.6 198 69.2
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 6.4e-71 271.6 251 55.4
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 4.2e-70 268.9 250 60.0
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.1e-69 266.5 254 55.9
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.1e-69 266.5 198 67.7
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.7e-68 263.5 200 67.5
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.3e-68 263.1 247 54.7
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 3.0e-68 262.7 247 54.7
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.0e-68 262.7 256 50.8
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 5.1e-68 261.9 247 54.7
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 6.6e-68 261.5 200 66.0
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 8.7e-68 261.2 244 56.6
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.1e-67 260.8 274 54.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.1e-67 260.8 200 66.0
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.1e-67 260.8 197 67.5
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.1e-67 260.8 277 52.7
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 1.1e-67 260.8 248 56.9
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.9e-67 260.0 250 56.8
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.9e-67 260.0 275 53.8
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.9e-67 260.0 185 70.8
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 5.6e-67 258.5 243 55.1
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.6e-66 256.9 192 67.2
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.1e-66 256.5 244 58.2
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.6e-66 255.8 272 53.3
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.8e-66 255.4 198 66.2
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 4.8e-66 255.4 221 61.5
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 8.1e-66 254.6 260 54.2
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 8.1e-66 254.6 248 56.5
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.1e-66 254.6 222 57.7
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-65 254.2 243 55.1
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.5e-64 250.4 259 49.0
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.5e-64 250.4 201 63.2
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 7.6e-64 248.1 189 66.1
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.5e-62 241.9 241 52.3
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 7.1e-62 241.5 199 61.3
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.2e-61 240.7 196 62.8
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 2.1e-61 240.0 188 64.4
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 3.5e-61 239.2 192 62.5
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 4.6e-61 238.8 170 71.8
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.9e-61 238.0 184 65.2
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 3.7e-58 229.2 180 63.9
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 6.2e-58 228.4 164 65.9
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 3.1e-57 226.1 164 66.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 9.0e-57 224.6 196 59.2
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.0e-56 223.4 331 41.7
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 3.4e-56 222.6 189 61.9
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 3.4e-56 222.6 168 66.7
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 7.6e-56 221.5 164 65.9
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 7.6e-56 221.5 164 65.9
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.3e-55 220.7 226 54.0
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-55 220.3 221 53.8
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.8e-55 219.2 164 65.2
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.5e-54 216.5 181 59.1
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 6.0e-53 211.8 204 56.9
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 7.9e-53 211.5 244 48.8
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.1e-51 207.6 148 67.6
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.4e-51 204.9 141 70.9
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.6e-50 203.8 126 77.8
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.3e-49 198.7 150 65.3
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-48 197.6 230 50.4
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.2e-48 197.6 230 50.4
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 7.9e-45 184.9 136 62.5
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.8e-41 173.7 263 40.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.7e-39 167.2 135 63.7
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.0e-31 139.0 211 40.3
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-30 137.9 116 59.5
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 4.5e-24 115.9 109 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.8e-20 104.0 106 49.1
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 6.7e-20 102.1 143 44.8
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 5.3e-17 92.4 214 30.8
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 4.5e-16 89.4 86 55.8
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.2e-15 87.0 60 65.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.0e-12 78.2 48 66.7


User provided reference genes

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