Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.1e-57 226.5 116 100.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 6.7e-28 127.5 93 74.2
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 7.0e-17 90.9 89 56.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.6e-16 89.7 91 56.0
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.5e-16 88.6 89 57.3
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.5e-16 88.6 89 59.6
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 3.5e-16 88.6 89 56.2
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 4.5e-16 88.2 89 58.4
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 5.9e-16 87.8 92 55.4
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.7e-16 87.4 89 53.9
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.3e-15 86.7 93 55.9
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.7e-15 86.3 94 56.4
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.2e-15 85.9 91 54.9
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.8e-15 85.1 91 59.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.8e-15 85.1 89 56.2
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.8e-15 85.1 89 56.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.8e-15 85.1 98 49.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 6.5e-15 84.3 96 54.2
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 8.5e-15 84.0 93 55.9
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.5e-15 84.0 89 55.1
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.1e-14 83.6 90 56.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.5e-14 83.2 89 51.7
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.5e-14 83.2 89 55.1
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.9e-14 82.8 96 53.1
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.9e-14 82.8 89 57.3
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.5e-14 82.4 93 54.8
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 2.5e-14 82.4 93 47.3
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 3.2e-14 82.0 91 49.5
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.2e-14 82.0 91 54.9
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.2e-14 81.6 94 52.1
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.2e-14 81.6 89 55.1
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.2e-14 81.6 89 53.9
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 5.5e-14 81.3 89 55.1
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 5.5e-14 81.3 89 55.1
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 5.5e-14 81.3 98 52.0
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 7.2e-14 80.9 95 53.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.2e-14 80.9 88 55.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 9.4e-14 80.5 92 57.6
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.2e-13 80.1 88 55.7
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.2e-13 80.1 93 54.8
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-13 80.1 93 54.8
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 2.1e-13 79.3 86 53.5
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.7e-13 79.0 88 58.0
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.6e-13 78.6 94 52.1
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 3.6e-13 78.6 90 48.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 8.0e-13 77.4 89 53.9
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 8.0e-13 77.4 89 50.6
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.0e-12 77.0 88 54.5
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.0e-12 77.0 94 52.1
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.0e-12 77.0 90 53.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.0e-12 77.0 89 52.8
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.4e-12 76.6 96 46.9
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.4e-12 76.6 96 46.9
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.4e-12 76.6 94 48.9
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.8e-12 76.3 93 48.4
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 3.0e-12 75.5 88 53.4
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.0e-12 75.5 93 54.8
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.0e-12 75.5 87 51.7
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 8.8e-12 73.9 94 51.1
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.2e-11 73.6 89 53.9
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.5e-11 73.2 68 52.9
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.5e-11 73.2 82 50.0
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.5e-11 73.2 93 48.4
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.5e-11 73.2 93 48.4
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 2.0e-11 72.8 95 48.4
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.7e-11 71.2 94 47.9
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.7e-11 71.2 87 50.6
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 7.5e-11 70.9 90 50.0
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 7.5e-11 70.9 94 46.8
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 7.5e-11 70.9 87 49.4
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 7.5e-11 70.9 88 51.1
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 7.5e-11 70.9 87 50.6
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 9.8e-11 70.5 89 44.9
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 9.8e-11 70.5 83 51.8
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 9.8e-11 70.5 96 47.9
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.3e-10 70.1 88 50.0
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.7e-10 69.7 83 48.2
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.7e-10 69.7 95 45.3
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.7e-10 69.7 91 50.5
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.7e-10 69.7 96 44.8
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 2.8e-10 68.9 92 45.7
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.7e-10 68.6 89 47.2
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-10 68.6 83 47.0
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.7e-10 68.6 93 45.2
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.7e-10 68.6 92 51.1
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.7e-10 68.6 95 45.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 4.8e-10 68.2 89 43.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.8e-10 68.2 82 52.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 6.3e-10 67.8 96 44.8
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.1e-09 67.0 88 46.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.4e-09 66.6 89 46.1
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-09 66.2 86 45.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.8e-09 66.2 86 46.5
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-09 66.2 92 48.9
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.8e-09 66.2 98 43.9
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.4e-09 65.9 94 46.8
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.4e-09 65.9 95 45.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.4e-09 65.9 98 43.9
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.1e-09 65.5 104 43.3
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 3.1e-09 65.5 93 45.2
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.1e-09 65.5 89 46.1
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 4.1e-09 65.1 92 43.5
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 4.1e-09 65.1 84 48.8
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.4e-09 64.7 84 51.2
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.0e-09 64.3 86 46.5
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 9.1e-09 63.9 84 47.6
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 9.1e-09 63.9 94 42.6
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 9.1e-09 63.9 92 48.9
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 9.1e-09 63.9 89 50.6
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.6e-08 63.2 93 47.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-08 63.2 87 44.8
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.6e-08 63.2 90 46.7
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-08 62.8 83 47.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.0e-08 62.8 89 43.8
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.0e-08 62.8 90 45.6
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 2.0e-08 62.8 82 45.1
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.7e-08 62.4 82 46.3
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 2.7e-08 62.4 87 44.8
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.7e-08 62.4 93 44.1
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.7e-08 62.4 90 45.6
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.5e-08 62.0 89 43.8
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.5e-08 62.0 86 43.0
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 4.5e-08 61.6 87 43.7
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.5e-08 61.6 93 43.0
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.7e-08 60.8 90 44.4
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.7e-08 60.8 75 52.0
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 7.7e-08 60.8 86 44.2
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 7.7e-08 60.8 91 45.1
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.7e-08 60.8 103 43.7
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.0e-07 60.5 94 41.5
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-07 60.5 90 43.3
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-07 60.5 95 43.2
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.0e-07 60.5 87 46.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-07 60.1 86 44.2
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.3e-07 60.1 85 43.5
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.3e-07 60.1 90 46.7
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.3e-07 60.1 93 45.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.7e-07 59.7 90 44.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.3e-07 59.3 86 45.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.9e-07 58.9 88 48.9
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.9e-07 58.9 82 43.9
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.9e-07 58.9 86 47.7
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.9e-07 58.9 92 40.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.9e-07 58.9 84 46.4
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.8e-07 58.5 86 41.9
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 3.8e-07 58.5 86 43.0
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 3.8e-07 58.5 90 42.2
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 5.0e-07 58.2 87 42.5
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 5.0e-07 58.2 91 42.9
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-07 58.2 92 39.1
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-07 58.2 95 44.2
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.0e-07 58.2 97 40.2
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 8.6e-07 57.4 87 46.0
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 8.6e-07 57.4 94 42.6
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.1e-06 57.0 90 44.4
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.1e-06 57.0 97 41.2
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-06 57.0 90 41.1
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.5e-06 56.6 86 46.5
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 1.9e-06 56.2 70 47.1
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 5.5e-06 54.7 90 41.1
FAN04G1321 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.2e-06 54.3 40 70.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.2e-06 54.3 94 39.4
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 9.5e-06 53.9 90 41.1


User provided reference genes

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