Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 3.9e-54 214.5 109 100.0
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 6.7e-46 187.2 109 86.2
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.5e-40 168.7 110 78.2
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 7.7e-34 147.1 112 68.8
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 7.2e-24 114.0 109 58.7
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 4.7e-23 111.3 113 57.5
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.7e-20 101.7 99 59.6
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 6.3e-20 100.9 106 53.8
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 6.3e-20 100.9 104 54.8
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 5.4e-19 97.8 109 52.3
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 9.2e-19 97.1 107 52.3
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 9.2e-19 97.1 111 49.5
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.2e-18 96.7 105 54.3
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 1.6e-18 96.3 99 52.5
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 7.8e-18 94.0 105 52.4
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.0e-17 93.6 111 51.4
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.7e-17 92.8 105 51.4
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 6.6e-17 90.9 118 50.0
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 6.6e-17 90.9 106 51.9
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.1e-16 90.1 105 54.3
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 1.5e-16 89.7 99 52.5
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.9e-16 89.4 105 51.4
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.6e-16 87.8 103 51.5
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 9.5e-16 87.0 109 48.6
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 9.5e-16 87.0 111 47.7
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 1.2e-15 86.7 104 49.0
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.2e-15 86.7 111 49.5
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 2.1e-15 85.9 101 50.5
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 2.1e-15 85.9 102 48.0
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 3.6e-15 85.1 115 48.7
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 4.7e-15 84.7 113 49.6
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 8.0e-15 84.0 111 42.3
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 1.0e-14 83.6 83 56.6
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.4e-14 83.2 103 46.6
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.4e-14 83.2 103 46.6
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 1.8e-14 82.8 107 48.6
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 3.0e-14 82.0 100 46.0
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 3.0e-14 82.0 111 45.9
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 3.0e-14 82.0 115 48.7
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 4.0e-14 81.6 111 45.0
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 4.0e-14 81.6 107 49.5
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.2e-13 80.1 100 45.0
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 1.5e-13 79.7 110 48.2
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 2.0e-13 79.3 109 43.1
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 2.0e-13 79.3 102 48.0
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.0e-13 79.3 104 42.3
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.0e-13 79.3 104 42.3
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 3.4e-13 78.6 105 41.9
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 4.4e-13 78.2 100 45.0
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 4.4e-13 78.2 105 50.5
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 7.5e-13 77.4 112 45.5
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 7.5e-13 77.4 99 46.5
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 7.5e-13 77.4 122 40.2
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 1.3e-12 76.6 113 46.9
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 1.3e-12 76.6 100 46.0
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.7e-12 76.3 100 44.0
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 2.2e-12 75.9 100 45.0
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 2.2e-12 75.9 106 45.3
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 2.2e-12 75.9 103 47.6
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 2.9e-12 75.5 99 46.5
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 3.7e-12 75.1 100 45.0
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 4.9e-12 74.7 111 43.2
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 4.9e-12 74.7 110 46.4
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 6.4e-12 74.3 64 57.8
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 6.4e-12 74.3 103 46.6
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 6.4e-12 74.3 59 57.6
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 8.3e-12 73.9 100 41.0
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.9e-11 72.8 96 45.8
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 2.4e-11 72.4 91 47.3
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 5.4e-11 71.2 102 41.2
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 7.0e-11 70.9 71 52.1
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 9.2e-11 70.5 112 43.8
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 1.6e-10 69.7 78 48.7
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 2.0e-10 69.3 83 50.6
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 3.5e-10 68.6 112 40.2
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 6.0e-10 67.8 67 52.2
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 1.0e-09 67.0 112 40.2
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 3.0e-09 65.5 136 39.7
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.0e-09 65.5 111 45.0
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 5.0e-09 64.7 99 42.4
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.0e-09 64.7 104 49.0
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.0e-09 64.7 104 49.0
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 6.6e-09 64.3 95 46.3
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 8.6e-09 63.9 55 54.5
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 1.5e-08 63.2 75 50.7
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 1.5e-08 63.2 111 45.9
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.6e-08 61.2 108 44.4
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 7.3e-08 60.8 100 42.0
Zm00001eb383160 Zea mays HOM05D021977 ORTHO05D007875 7.3e-08 60.8 125 36.8
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 9.5e-08 60.5 101 45.5
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 1.2e-07 60.1 60 53.3
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 2.8e-07 58.9 101 44.6
HPP92_008631 Vanilla planifolia HOM05D026338 ORTHO05D007875 2.8e-07 58.9 100 40.0
Zm00001eb277920 Zea mays HOM05D021977 ORTHO05D007875 4.7e-07 58.2 110 35.5
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 6.2e-07 57.8 122 38.5
Zm00001eb204270 Zea mays HOM05D021977 ORTHO05D007875 1.4e-06 56.6 58 56.9
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 1.8e-06 56.2 118 35.6
THA.LOC104815061 Tarenaya hassleriana HOM05D008938 ORTHO05D011105 4.0e-06 55.1 114 38.6
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 5.2e-06 54.7 115 34.8
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 6.8e-06 54.3 124 33.9
SalBow8G4830 Salvia bowleyana HOM05D007590 ORTHO05D007875 6.8e-06 54.3 61 49.2
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 8.9e-06 53.9 115 34.8


User provided reference genes

Program Settings