Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 2.4e-191 672.2 374 100.0
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.7e-136 490.0 374 76.5
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 8.3e-120 434.5 374 70.9
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 3.2e-79 299.7 381 51.7
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 2.5e-76 290.0 382 52.4
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 9.6e-76 288.1 390 49.0
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 3.7e-75 286.2 378 49.7
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 6.9e-74 282.0 376 48.4
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 4.2e-71 272.7 384 47.1
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 4.6e-70 269.2 291 55.7
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.1e-68 264.6 384 47.7
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 3.3e-68 263.1 390 47.4
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 2.8e-67 260.0 378 45.2
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 2.4e-66 256.9 454 39.4
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 3.1e-66 256.5 232 57.3
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 9.0e-66 255.0 232 57.3
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 5.5e-63 245.7 397 45.8
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 2.7e-62 243.4 244 58.2
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 1.8e-61 240.7 230 58.3
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 2.3e-61 240.4 383 45.4
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 2.3e-61 240.4 501 35.7
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 9.7e-60 235.0 246 54.1
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 4.8e-59 232.6 371 47.7
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 5.3e-58 229.2 380 45.0
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 1.5e-57 227.6 281 50.2
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 2.6e-57 226.9 378 42.1
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 7.7e-57 225.3 367 43.6
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 3.8e-56 223.0 267 50.2
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 3.2e-55 219.9 382 44.5
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 7.2e-55 218.8 367 43.3
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 7.2e-55 218.8 260 46.9
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 1.2e-54 218.0 397 41.1
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.2e-54 218.0 382 44.2
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.2e-54 218.0 382 44.2
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 1.2e-54 218.0 379 46.2
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.6e-54 217.6 364 42.9
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.6e-54 216.5 382 44.2
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 4.6e-54 216.1 260 46.5
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 3.0e-53 213.4 378 40.5
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 2.0e-52 210.7 401 39.7
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 7.4e-52 208.8 382 40.1
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 2.2e-51 207.2 305 46.2
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 8.2e-51 205.3 274 47.8
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 2.4e-50 203.8 373 42.6
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 4.1e-50 203.0 261 49.8
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 4.1e-50 203.0 232 51.3
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 5.3e-50 202.6 342 39.2
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.2e-49 201.4 255 49.0
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.0e-48 198.4 232 49.6
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 1.3e-48 198.0 210 53.3
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 4.2e-47 193.0 300 42.3
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 4.2e-47 193.0 378 38.6
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 1.2e-46 191.4 516 36.4
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 1.6e-46 191.0 232 50.9
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 4.7e-46 189.5 232 49.6
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 6.1e-46 189.1 236 47.0
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 6.1e-46 189.1 395 35.9
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 1.0e-45 188.3 279 45.9
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.4e-45 188.0 274 46.4
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 3.9e-45 186.4 323 42.1
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 6.7e-45 185.7 274 45.3
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 3.3e-44 183.3 274 46.0
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 7.4e-44 182.2 350 40.6
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 1.3e-43 181.4 203 50.2
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 4.8e-43 179.5 398 41.2
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 7.0e-42 175.6 348 40.2
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 1.5e-41 174.5 383 37.6
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 1.5e-41 174.5 327 40.1
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.5e-41 174.5 373 39.7
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 1.4e-39 167.9 275 44.7
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 2.5e-39 167.2 243 47.7
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 2.5e-39 167.2 243 47.7
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 5.5e-39 166.0 243 46.5
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 9.4e-39 165.2 271 45.0
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 2.1e-38 164.1 308 40.6
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 8.8e-37 158.7 184 51.1
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 2.6e-36 157.1 284 43.3
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.6e-36 157.1 273 42.1
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 9.7e-36 155.2 321 37.7
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.3e-35 154.8 330 36.4
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 1.8e-34 151.0 157 56.1
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 2.4e-34 150.6 262 42.7
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 1.6e-33 147.9 160 53.8
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 2.2e-32 144.1 329 35.3
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 6.5e-32 142.5 378 37.0
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 5.5e-31 139.4 361 36.0
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 5.2e-29 132.9 240 41.2
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 8.0e-22 109.0 338 33.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.4e-21 108.2 226 36.7
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 8.3e-19 99.0 200 36.0
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 4.5e-17 93.2 215 38.1
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 7.2e-15 85.9 248 30.6
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.6e-14 84.7 222 32.4
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.1e-14 82.8 267 29.6
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.1e-14 82.8 267 29.6
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.1e-14 82.8 267 29.6
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.2e-12 78.6 264 32.2
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 1.2e-12 78.6 78 59.0
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.5e-12 78.2 243 33.7
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.5e-12 78.2 226 30.5
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 4.4e-12 76.6 222 31.5
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.3e-11 75.1 240 30.8
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.7e-09 67.4 199 30.2
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 7.8e-09 65.9 159 35.8
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 7.8e-09 65.9 269 27.1
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.0e-08 65.5 297 24.2
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.3e-08 65.1 256 31.2
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.9e-08 63.9 270 27.8
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.1e-07 62.0 194 31.4
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.9e-07 61.2 243 28.0
SMO239G0125 Selaginella moellendorffii HOM05D007666 ORTHO05D009567 3.3e-07 60.5 224 31.2
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.2e-06 58.5 320 30.0
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 2.8e-06 57.4 199 29.1


User provided reference genes

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