Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 1.7e-177 625.9 321 100.0
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.3e-150 536.6 321 87.5
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 3.2e-120 435.6 321 70.7
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.5e-120 434.9 319 72.4
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 3.0e-118 429.1 311 71.7
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.1e-117 427.2 321 69.5
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 6.2e-116 421.4 321 68.2
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.0e-115 418.7 317 68.5
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.7e-113 413.3 294 71.4
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.7e-113 413.3 317 67.8
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 8.4e-113 411.0 283 72.8
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 1.9e-112 409.8 317 67.5
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.9e-112 409.8 278 74.8
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.9e-112 409.8 278 74.8
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.9e-112 409.8 283 72.8
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.5e-112 409.5 295 70.2
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.2e-112 409.1 318 67.0
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 9.3e-112 407.5 281 71.9
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 9.3e-112 407.5 283 72.8
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 9.3e-112 407.5 315 68.3
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 2.7e-111 406.0 292 71.2
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 3.5e-111 405.6 286 71.7
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 6.0e-111 404.8 296 69.9
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 6.0e-111 404.8 290 71.7
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.0e-110 404.1 289 71.6
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.8e-110 403.3 286 71.3
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.3e-110 402.9 312 65.7
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.3e-110 402.9 317 67.2
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 3.9e-110 402.1 293 69.6
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.9e-110 402.1 319 66.8
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.5e-109 400.2 275 74.9
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 9.7e-109 397.5 317 66.9
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 2.8e-108 396.0 279 71.0
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.8e-108 396.0 316 66.5
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.8e-108 396.0 283 70.7
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 3.7e-108 395.6 299 68.2
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 3.7e-108 395.6 313 67.1
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 8.2e-108 394.4 318 67.0
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.1e-107 394.0 303 68.0
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.1e-107 394.0 305 67.2
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 2.4e-107 392.9 317 66.2
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 2.4e-107 392.9 282 71.3
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 4.1e-107 392.1 317 65.3
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.2e-106 390.6 291 69.8
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.5e-106 390.2 320 65.6
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.6e-106 389.4 317 64.4
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 4.5e-106 388.7 278 70.9
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 7.7e-106 387.9 294 68.0
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 7.7e-106 387.9 288 67.7
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 1.3e-105 387.1 333 62.5
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.3e-105 387.1 278 70.5
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.7e-105 386.7 290 65.5
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 2.9e-105 386.0 287 67.2
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 5.0e-105 385.2 280 70.0
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 6.5e-105 384.8 283 68.6
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 6.5e-105 384.8 287 66.9
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 8.5e-105 384.4 291 69.1
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.1e-104 384.0 294 68.4
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.1e-104 384.0 294 68.4
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.5e-104 382.9 282 69.1
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 2.5e-104 382.9 283 67.5
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 7.2e-104 381.3 296 65.9
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 7.2e-104 381.3 303 66.3
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 9.4e-104 380.9 283 69.3
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.2e-103 380.6 281 69.4
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 3.6e-103 379.0 292 67.5
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 3.6e-103 379.0 283 68.2
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.8e-102 376.7 343 61.2
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 1.8e-102 376.7 297 68.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 8.8e-102 374.4 321 63.2
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 8.8e-102 374.4 321 63.2
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.1e-101 374.0 322 63.0
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 3.3e-101 372.5 301 61.8
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.3e-101 372.1 346 60.7
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.7e-100 369.0 367 58.0
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-99 367.5 321 63.6
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 6.9e-99 364.8 362 55.5
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 9.1e-99 364.4 331 59.8
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.2e-98 364.0 329 58.4
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-97 360.9 283 65.4
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.3e-97 360.5 247 74.1
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.3e-97 360.5 312 60.6
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.2e-97 359.8 405 52.6
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 5.0e-97 358.6 263 67.3
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 6.5e-97 358.2 247 73.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-96 355.1 254 72.4
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 7.2e-96 354.8 251 73.3
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 9.4e-96 354.4 264 66.7
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 4.7e-95 352.1 307 62.2
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 7.9e-95 351.3 297 63.3
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.4e-94 350.5 292 63.4
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 5.1e-94 348.6 247 71.3
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.6e-93 346.3 282 61.0
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 7.4e-93 344.7 288 61.5
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.1e-91 340.9 263 68.1
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 3.6e-87 325.9 286 62.2
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 2.0e-82 310.1 267 57.3
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.6e-82 309.7 213 72.8
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 5.0e-81 305.4 296 53.0
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.4e-80 301.2 253 64.4
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.7e-77 292.0 283 58.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 7.5e-77 291.6 191 73.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.8e-76 289.7 228 65.8
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 2.8e-76 289.7 268 54.5
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.2e-73 280.0 224 65.6
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 8.3e-68 261.5 203 63.5
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.4e-67 260.0 213 60.1
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.5e-66 255.8 202 62.4
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.9e-65 253.1 203 65.5
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 7.5e-61 238.4 171 69.6
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 9.8e-61 238.0 170 71.2
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-60 236.9 160 73.1
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 8.9e-54 214.9 212 52.8
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 2.2e-52 210.3 128 78.9
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 7.8e-50 201.8 192 58.9
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.5e-48 196.8 188 58.5
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-44 182.2 164 61.6
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-43 181.0 244 47.1
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-43 179.9 158 61.4
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 7.1e-43 178.7 157 62.4
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-42 177.6 158 61.4
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-42 176.8 155 62.6
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 7.8e-42 175.3 165 58.8
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-41 174.5 172 57.6
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-41 173.7 165 57.6
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-41 172.2 157 60.5
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.5e-40 170.2 138 63.8
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 4.4e-37 159.5 177 53.1
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-36 157.9 164 56.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-36 156.4 146 58.9
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 4.9e-36 156.0 129 65.1
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 6.0e-34 149.1 95 75.8
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-32 144.1 160 53.8
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-32 144.1 160 53.8
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 4.3e-32 142.9 96 72.9
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-31 140.6 94 76.6
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-31 139.8 122 61.5
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-31 139.0 98 72.4
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-31 139.0 121 61.2
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 4.2e-27 126.3 335 32.5
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.7e-25 120.9 75 77.3
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 8.7e-25 118.6 104 60.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-25 118.6 109 57.8
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-23 113.6 142 50.7
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-20 104.0 133 45.1
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-19 100.9 70 75.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-16 90.9 89 55.1
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-15 87.8 96 50.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 4.8e-15 86.3 56 71.4
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 5.3e-14 82.8 57 64.9
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.3e-09 67.4 154 30.5
Duzib205G0541 Durio zibethinus HOM05D004703 ORTHO05D005801 1.6e-07 61.2 146 34.9
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.8e-06 57.8 111 35.1


User provided reference genes

Program Settings