Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 9.2e-56 219.9 107 100.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.1e-47 192.2 107 88.8
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.4e-42 174.5 104 84.6
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.9e-40 169.1 102 83.3
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.7e-30 136.0 109 73.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 7.3e-29 130.6 105 70.5
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.2e-28 127.5 108 64.8
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.2e-26 123.2 109 66.1
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 7.6e-26 120.6 103 70.9
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.3e-25 119.8 109 65.1
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.9e-25 117.9 113 64.6
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-24 116.7 107 63.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.4e-24 115.5 113 63.7
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 4.2e-24 114.8 103 65.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.4e-24 114.4 113 62.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.9e-23 110.5 102 65.7
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.0e-22 110.2 103 61.2
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.3e-22 109.0 102 64.7
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.5e-21 106.3 102 63.7
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 2.5e-21 105.5 103 60.2
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 9.6e-21 103.6 103 59.2
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.8e-20 101.3 108 56.5
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.2e-20 100.9 106 56.6
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.4e-19 99.8 82 63.4
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.8e-19 99.4 105 56.2
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 5.3e-19 97.8 91 58.2
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.2e-18 96.7 106 55.7
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.5e-18 96.3 92 60.9
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.6e-18 95.5 112 54.5
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 4.5e-18 94.7 109 54.1
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 5.8e-18 94.4 80 62.5
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.8e-18 94.4 93 58.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.3e-17 93.2 102 53.9
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.9e-17 92.0 86 61.6
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.8e-17 91.7 80 63.8
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 6.4e-17 90.9 97 51.5
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 8.4e-17 90.5 84 57.1
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.1e-16 90.1 80 61.2
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.4e-16 89.7 82 56.1
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.4e-16 89.7 95 56.8
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.4e-16 89.0 81 58.0
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 2.4e-16 89.0 80 57.5
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 4.2e-16 88.2 106 51.9
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.2e-15 86.7 85 60.0
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.1e-15 85.9 109 47.7
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 6.0e-15 84.3 81 53.1
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 7.9e-15 84.0 95 50.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 7.9e-15 84.0 81 54.3
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 3.0e-14 82.0 75 58.7
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.5e-13 79.7 86 54.7
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.5e-13 79.0 84 57.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.5e-13 79.0 76 59.2
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 4.3e-13 78.2 90 53.3
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 5.6e-13 77.8 90 55.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.6e-13 77.8 90 52.2
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 7.4e-13 77.4 91 51.6
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.3e-12 76.6 81 54.3
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.6e-12 76.3 84 53.6
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.1e-12 75.9 97 49.5
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.8e-12 75.5 95 49.5
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 4.8e-12 74.7 93 50.5
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.1e-11 73.6 94 48.9
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.1e-11 72.0 111 39.6
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 3.1e-11 72.0 79 49.4
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.1e-11 72.0 76 59.2
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.2e-10 70.1 91 47.3
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.6e-10 68.9 83 51.8
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.6e-10 68.9 61 63.9
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.6e-10 67.4 93 45.2
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.6e-10 67.4 63 61.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.7e-09 66.2 69 53.6
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.9e-09 65.5 93 41.9
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.9e-09 65.5 83 49.4
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.9e-09 65.5 83 53.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.8e-09 65.1 77 48.1
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 3.8e-09 65.1 83 49.4
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.8e-09 65.1 83 49.4
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.8e-09 65.1 83 49.4
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.8e-09 65.1 74 47.3
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.8e-09 65.1 92 46.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 4.9e-09 64.7 46 67.4
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.9e-09 64.7 94 44.7
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 6.5e-09 64.3 97 41.2
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.1e-08 63.5 85 43.5
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-08 63.5 52 57.7
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 89 47.2
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-08 63.2 46 65.2
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.4e-08 63.2 81 46.9
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-08 62.8 46 65.2
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.9e-08 62.8 54 55.6
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.5e-08 62.4 46 65.2
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 54 51.9
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 3.2e-08 62.0 81 49.4
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 3.2e-08 62.0 89 47.2
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.2e-08 62.0 63 52.4
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 4.2e-08 61.6 47 61.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.2e-08 61.6 78 47.4
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.2e-08 61.6 93 43.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 5.5e-08 61.2 43 67.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 7.1e-08 60.8 85 42.4
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 7.1e-08 60.8 46 60.9
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 7.1e-08 60.8 53 52.8
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.1e-08 60.8 108 39.8
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 9.3e-08 60.5 84 42.9
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 9.3e-08 60.5 55 50.9
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 9.3e-08 60.5 94 36.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.2e-07 60.1 65 56.9
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-07 60.1 63 50.8
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.2e-07 60.1 63 50.8
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.2e-07 60.1 47 57.4
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-07 59.7 68 48.5
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 68 48.5
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.6e-07 59.7 68 48.5
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.6e-07 59.7 93 44.1
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.6e-07 59.7 45 62.2
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.6e-07 59.7 99 44.4
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 49.2
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 49.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 2.1e-07 59.3 74 52.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.7e-07 58.9 63 50.8
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.7e-07 58.9 63 50.8
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-07 58.9 48 58.3
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-07 58.9 63 50.8
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-07 58.9 98 39.8
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.7e-07 58.9 63 52.4
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.7e-07 58.9 101 39.6
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.7e-07 58.9 55 52.7
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 3.5e-07 58.5 63 49.2
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 63 49.2
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 3.5e-07 58.5 63 49.2
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.5e-07 58.5 63 50.8
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 4.6e-07 58.2 99 40.4
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 4.6e-07 58.2 47 61.7
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 4.6e-07 58.2 51 51.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.6e-07 58.2 46 58.7
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 6.0e-07 57.8 63 54.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 6.0e-07 57.8 42 64.3
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 6.0e-07 57.8 90 45.6
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 7.9e-07 57.4 68 48.5
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 7.9e-07 57.4 81 43.2
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.0e-06 57.0 104 39.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-06 57.0 80 43.8
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-06 56.6 63 49.2
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.3e-06 56.6 59 54.2
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 1.8e-06 56.2 108 37.0
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 1.8e-06 56.2 108 36.1
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.8e-06 56.2 52 55.8
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.3e-06 55.8 63 49.2
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.3e-06 55.8 41 63.4
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.0e-06 55.5 39 69.2
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.0e-06 55.5 39 69.2
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 3.0e-06 55.5 56 55.4
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.0e-06 55.5 88 43.2
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.9e-06 55.1 63 50.8
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.9e-06 55.1 52 50.0
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 8.7e-06 53.9 73 45.2
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 8.7e-06 53.9 57 52.6
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 8.7e-06 53.9 55 45.5


User provided reference genes

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