Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1755.0 925 100.0
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1483.8 925 87.0
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1353.6 926 78.3
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1335.1 928 77.0
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1327.8 928 76.3
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1325.8 931 77.1
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1316.2 929 76.1
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1314.3 932 76.0
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1314.3 930 76.2
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1311.6 933 75.3
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1309.7 933 75.5
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1308.1 928 75.6
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1306.2 928 75.4
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1305.0 928 75.2
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1300.0 931 75.5
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1297.3 932 75.8
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1296.2 931 74.7
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1294.6 931 75.6
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1292.3 929 74.4
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1288.5 929 74.4
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1288.1 929 74.6
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1283.9 929 74.4
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 929 74.3
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1278.5 932 74.0
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1277.7 931 73.6
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1276.9 929 74.0
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1276.5 931 73.1
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1276.5 930 73.8
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1275.0 928 74.0
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1267.3 931 73.7
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1264.6 928 73.5
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1256.1 929 73.8
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1250.7 932 72.4
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1247.6 930 72.6
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1246.9 928 72.6
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1245.3 928 72.3
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1241.9 931 72.8
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1239.9 931 72.2
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1238.8 931 72.2
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1238.8 933 71.5
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1238.4 928 72.4
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1236.1 931 71.4
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1234.6 928 72.3
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1229.9 929 71.4
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1229.2 931 71.8
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1223.0 928 70.5
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1221.8 938 69.9
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1220.3 933 70.7
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1219.9 928 70.8
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1219.5 920 72.0
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1219.1 933 70.6
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1218.0 928 70.2
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1216.8 929 70.5
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1216.8 924 72.2
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1216.4 932 70.1
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1214.9 933 70.3
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1214.9 933 70.2
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1214.1 932 69.7
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1213.0 933 70.3
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1213.0 932 70.1
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1212.2 929 69.9
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1212.2 931 70.7
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1209.9 931 70.0
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1208.0 930 69.8
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1207.6 930 69.8
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1206.8 932 69.4
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 932 70.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 931 70.0
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1204.1 929 69.5
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1204.1 929 71.0
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1203.3 932 69.3
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1199.9 930 69.5
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1199.9 929 70.6
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1196.8 942 69.9
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1192.2 942 69.7
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1191.4 932 69.5
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 928 68.8
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1186.8 929 69.4
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1176.8 932 69.4
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1170.6 949 66.7
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1169.8 949 66.7
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1166.8 932 67.5
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1165.2 928 67.5
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1164.8 930 68.2
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1163.7 926 67.8
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1161.7 929 67.3
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1140.6 929 65.9
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1134.4 900 68.8
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1134.0 837 72.8
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1126.3 818 74.6
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1123.6 932 67.7
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1120.5 953 66.5
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1120.1 946 64.7
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1104.4 1089 58.1
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1104.0 929 64.9
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 2.5e-311 1072.0 930 62.7
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 2.5e-295 1018.8 929 62.9
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 2.6e-287 992.3 778 70.3
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.8e-277 959.5 810 64.1
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 2.8e-241 839.3 950 50.8
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 6.2e-241 838.2 944 50.6
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 8.1e-225 784.6 614 69.2
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 5.2e-224 781.9 587 70.7
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 2.4e-221 773.1 586 69.6
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 3.0e-219 766.1 932 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 4.9e-214 748.8 846 51.3
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.1e-213 747.7 702 59.8
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.2e-213 745.7 580 70.7
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 5.3e-208 728.8 708 59.9
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 6.7e-195 685.3 425 85.2
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.5e-183 647.5 995 41.6
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 3.0e-179 633.3 490 72.0
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.7e-177 627.5 647 57.0
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.4e-176 624.4 465 72.3
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.9e-150 537.0 392 72.4
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 3.8e-150 536.6 438 66.4
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.0e-138 497.7 425 66.6
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 9.9e-122 442.2 385 61.8
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 8.3e-121 439.1 293 78.8
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.1e-120 438.7 372 65.3
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.1e-107 395.6 427 54.6
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.4e-104 385.2 254 78.3
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 2.5e-101 374.4 232 79.7
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 1.4e-99 368.6 232 78.4
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 2.3e-86 324.7 946 29.2
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.2e-79 302.4 211 71.1
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 5.9e-66 256.9 230 63.5
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.1e-64 252.7 211 63.0
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.4e-64 252.3 259 56.0
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 3.3e-61 241.1 179 72.6
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 4.8e-60 237.3 947 24.6
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 8.5e-57 226.5 209 67.0
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.1e-56 226.1 289 46.7
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 7.2e-48 196.8 122 77.9
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 6.1e-47 193.7 127 78.7
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 9.7e-45 186.4 173 57.8
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 3.1e-43 181.4 105 92.4
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 2.2e-36 158.7 101 76.2
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 1.1e-35 156.4 101 76.2
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 5.4e-35 154.1 96 75.0
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 7.0e-35 153.7 96 77.1
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.3e-33 149.4 98 75.5
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 6.6e-33 147.1 94 78.7
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 2.5e-32 145.2 253 39.9
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.0e-30 139.8 94 74.5
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 6.3e-28 130.6 94 72.3
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 3.5e-26 124.8 87 81.6
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 4.3e-24 117.9 125 54.4
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 4.7e-23 114.4 141 48.9
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 5.2e-22 110.9 241 34.9
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 1.5e-21 109.4 213 38.0
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.5e-21 109.4 91 68.1
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-19 102.8 82 68.3
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 7.0e-19 100.5 72 77.8
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-17 96.3 96 45.8
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 5.0e-17 94.4 133 50.4
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 9.5e-16 90.1 219 32.9
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 6.0e-10 70.9 58 63.8
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.6e-07 62.8 65 50.8
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 2.1e-07 62.4 61 55.7


User provided reference genes

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