Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 4.3e-181 637.9 328 100.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 5.1e-89 332.0 328 58.2
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.9e-72 276.9 327 51.7
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 5.7e-72 275.4 328 51.8
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.1e-56 224.6 329 45.9
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 5.3e-54 215.7 328 41.2
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.6e-50 204.1 332 41.3
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 2.1e-50 203.8 335 43.3
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 2.7e-50 203.4 332 41.3
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 6.1e-50 202.2 327 41.3
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.0e-49 201.4 328 40.9
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 3.0e-49 199.9 328 39.6
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 8.8e-49 198.4 329 40.4
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 8.8e-49 198.4 329 40.4
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.0e-48 197.2 328 39.9
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 4.4e-48 196.1 331 40.5
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 4.4e-48 196.1 329 39.8
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 5.7e-48 195.7 329 39.8
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 9.7e-48 194.9 328 38.4
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.3e-47 194.5 331 40.5
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.3e-47 194.5 328 40.2
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.7e-47 194.1 329 40.4
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.2e-47 193.7 328 39.6
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 6.3e-47 192.2 331 39.9
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.3e-47 192.2 329 40.1
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.0e-46 188.7 330 39.1
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 9.1e-46 188.3 162 60.5
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.6e-45 186.8 329 39.5
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 3.5e-45 186.4 329 39.8
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 5.9e-45 185.7 330 40.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.7e-44 184.1 329 39.5
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-44 184.1 329 39.2
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-44 184.1 329 39.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.2e-44 183.7 328 38.4
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.1e-43 181.4 329 37.7
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.5e-43 181.0 329 38.9
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.5e-43 180.3 333 38.7
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.2e-43 179.9 329 38.6
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 4.2e-43 179.5 328 38.4
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 4.2e-43 179.5 309 39.2
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.6e-42 177.6 330 38.5
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.7e-42 176.0 329 38.3
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.0e-41 174.9 331 37.2
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.0e-41 172.9 331 36.9
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 5.2e-41 172.6 332 37.3
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 6.7e-41 172.2 330 37.9
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 8.8e-41 171.8 166 57.8
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.5e-40 171.0 329 35.6
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 3.3e-40 169.9 328 37.5
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.3e-39 167.9 333 35.7
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 2.2e-39 167.2 324 37.7
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.8e-39 166.0 328 36.6
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.8e-39 166.0 328 36.6
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-38 164.1 133 62.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.4e-38 163.7 328 36.9
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.1e-38 163.3 328 35.4
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.1e-38 163.3 329 34.3
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.1e-38 162.9 328 37.2
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 4.1e-38 162.9 328 37.2
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.0e-37 160.6 331 35.0
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.0e-37 160.6 329 34.7
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.7e-37 160.2 330 37.3
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 2.7e-37 160.2 328 35.1
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 5.9e-37 159.1 329 34.0
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 7.7e-37 158.7 328 37.2
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-36 157.5 329 35.9
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-36 157.5 329 35.9
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 8.5e-36 155.2 330 34.8
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 8.5e-36 155.2 328 35.4
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 8.5e-36 155.2 330 37.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 2.5e-35 153.7 334 36.5
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 3.2e-35 153.3 327 36.7
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.2e-35 153.3 332 34.9
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.2e-35 152.9 332 34.6
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.2e-35 152.9 332 34.6
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 4.2e-35 152.9 330 35.2
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 5.5e-35 152.5 328 36.3
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.6e-34 151.0 328 35.1
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.7e-34 150.2 330 34.8
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.6e-34 149.8 328 32.6
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 4.7e-34 149.4 289 37.0
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.8e-33 147.5 328 33.8
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.3e-33 147.1 329 34.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.3e-33 147.1 332 34.6
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 4.0e-33 146.4 329 34.3
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 4.0e-33 146.4 329 34.3
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 8.8e-33 145.2 333 34.2
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.0e-32 144.1 325 34.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.0e-32 144.1 330 34.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.6e-32 143.7 334 33.8
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 2.6e-32 143.7 328 33.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 2.6e-32 143.7 328 33.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.4e-32 143.3 332 34.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 4.4e-32 142.9 328 34.8
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 5.7e-32 142.5 329 34.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 7.5e-32 142.1 329 33.1
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 7.5e-32 142.1 328 33.8
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 9.8e-32 141.7 328 33.2
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.3e-31 141.4 341 31.7
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 1.7e-31 141.0 342 33.9
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.7e-31 141.0 334 35.3
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.8e-31 140.2 332 32.8
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.7e-31 139.8 324 33.0
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 3.7e-31 139.8 277 35.7
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 8.3e-31 138.7 334 33.2
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.8e-30 137.5 327 32.7
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 5.4e-30 136.0 327 33.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.0e-30 135.6 330 32.1
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-29 134.4 329 34.0
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 2.0e-29 134.0 158 48.7
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.0e-29 134.0 328 35.4
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.5e-29 133.3 330 31.5
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.5e-29 133.3 336 32.4
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 5.9e-29 132.5 163 50.3
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 5.9e-29 132.5 334 32.9
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.7e-29 132.1 329 33.7
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.0e-28 131.7 329 31.3
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.7e-28 131.0 326 32.5
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.9e-27 127.5 169 45.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.5e-27 127.1 326 31.9
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.5e-27 127.1 330 32.1
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.5e-27 127.1 330 32.1
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.5e-27 127.1 330 32.1
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.2e-27 126.7 162 50.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 4.2e-27 126.3 335 31.9
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.2e-26 124.8 350 30.9
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.7e-26 122.9 164 44.5
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 4.7e-26 122.9 331 31.7
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-25 120.9 330 31.8
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.8e-25 120.9 330 31.8
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.0e-25 119.8 166 44.6
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.2e-25 119.4 290 34.5
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 6.8e-25 119.0 324 30.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 8.8e-25 118.6 140 48.6
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.6e-24 117.1 332 30.4
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 3.4e-24 116.7 328 30.8
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.7e-24 115.9 128 51.6
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 7.5e-24 115.5 290 31.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.1e-22 111.7 329 30.4
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.8e-22 110.9 330 30.3
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 2.4e-22 110.5 327 30.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 5.4e-22 109.4 298 31.2
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.6e-21 107.8 331 29.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 1.0e-20 105.1 325 29.2
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 2.9e-20 103.6 162 43.2
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.6e-20 102.1 226 35.0
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.5e-19 101.3 330 28.2
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.8e-18 97.1 298 29.9
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 6.1e-18 95.9 328 28.7
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.8e-17 94.4 216 34.3
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.7e-15 87.8 263 29.7
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 6.4e-15 85.9 103 49.5
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 8.3e-15 85.5 88 51.1
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.4e-14 84.0 126 44.4
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.6e-13 81.3 294 27.6
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.6e-13 79.7 254 29.5
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.0e-12 78.6 213 29.1
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 3.0e-12 77.0 213 27.7
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.5e-11 74.7 330 25.5
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 3.3e-11 73.6 212 29.2
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 3.3e-11 73.6 109 41.3
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 7.3e-11 72.4 44 84.1
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.2e-10 71.6 72 58.3
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.6e-10 71.2 270 25.6
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 6.2e-10 69.3 75 50.7
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.2e-10 69.3 44 77.3
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.2e-10 69.3 44 77.3
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.8e-09 67.8 104 41.3
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.8e-09 67.8 104 41.3
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 2.3e-09 67.4 95 46.3
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 2.6e-08 63.9 104 40.4
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 2.6e-08 63.9 104 40.4
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 4.1e-06 56.6 138 36.2
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 5.4e-06 56.2 87 40.2


User provided reference genes

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