Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 4.7e-132 474.6 244 100.0
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 5.0e-65 251.9 244 61.5
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.4e-64 250.4 271 55.4
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 6.3e-60 235.0 244 53.7
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 2.8e-44 183.0 246 45.9
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.5e-40 169.9 250 45.2
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.5e-40 169.9 242 45.5
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 9.5e-40 167.9 244 41.0
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 8.0e-39 164.9 244 40.6
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 8.0e-39 164.9 244 43.4
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 8.0e-39 164.9 246 43.9
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.3e-38 163.3 244 40.6
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.3e-38 163.3 251 44.2
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.3e-36 157.5 244 38.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.2e-36 156.8 245 40.8
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.7e-36 156.0 245 40.8
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 6.3e-36 155.2 245 40.8
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.4e-35 154.1 244 39.3
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.8e-35 153.7 244 43.0
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 3.1e-35 152.9 244 37.7
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 3.1e-35 152.9 244 40.6
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 5.4e-35 152.1 252 42.1
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 5.4e-35 152.1 244 39.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.6e-34 150.6 248 43.1
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.6e-34 150.6 248 39.5
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.7e-34 149.8 244 37.7
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.3e-33 147.5 246 38.2
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.3e-33 147.5 246 38.2
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.3e-33 147.5 244 38.1
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.6e-33 144.8 244 37.3
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.1e-32 144.4 246 35.8
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 1.9e-32 143.7 247 36.0
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 7.3e-32 141.7 246 40.2
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 7.3e-32 141.7 249 36.1
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 9.5e-32 141.4 245 40.0
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.2e-31 141.0 238 35.7
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.6e-31 140.6 242 38.4
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 8.0e-31 138.3 244 36.5
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.4e-30 137.5 244 35.2
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.4e-30 137.5 244 42.2
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 2.3e-30 136.7 244 38.1
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.1e-30 136.3 246 35.4
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 3.1e-30 136.3 243 38.3
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 5.2e-30 135.6 244 36.5
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 5.2e-30 135.6 244 37.3
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 6.8e-30 135.2 245 37.6
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 8.9e-30 134.8 244 36.1
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.5e-29 134.0 244 39.8
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.0e-29 133.7 244 38.9
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.4e-29 132.5 244 38.9
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.4e-29 132.5 244 35.2
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 4.4e-29 132.5 245 33.9
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 5.8e-29 132.1 244 36.9
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 7.5e-29 131.7 244 38.9
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.3e-28 131.0 249 39.0
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.3e-28 131.0 244 38.9
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.3e-28 131.0 244 35.2
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.3e-28 131.0 244 34.0
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 2.2e-28 130.2 240 32.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.9e-28 129.8 241 35.3
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.7e-28 129.4 244 40.6
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 3.7e-28 129.4 245 33.5
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 3.7e-28 129.4 244 35.2
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 6.4e-28 128.6 240 32.9
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.9e-27 127.1 240 37.5
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.9e-27 127.1 240 37.5
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.9e-27 127.1 240 33.3
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 4.1e-27 125.9 252 34.1
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 5.4e-27 125.6 246 33.7
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 5.4e-27 125.6 246 34.1
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 5.4e-27 125.6 240 33.3
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 7.0e-27 125.2 244 34.8
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 7.0e-27 125.2 239 33.9
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.6e-26 124.0 244 35.7
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 1.6e-26 124.0 242 34.7
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.0e-26 123.6 247 34.0
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 4.6e-26 122.5 87 64.4
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 6.0e-26 122.1 242 33.9
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 7.8e-26 121.7 240 34.2
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-25 120.6 242 33.9
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.3e-25 120.2 242 34.3
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.3e-25 120.2 244 34.4
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 5.0e-25 119.0 242 33.5
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.0e-25 119.0 244 33.6
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 8.6e-25 118.2 248 36.7
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.1e-24 117.9 244 33.6
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.1e-24 117.9 200 36.0
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-24 117.9 80 68.8
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.9e-24 117.1 244 36.9
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.9e-24 117.1 251 33.9
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.9e-24 117.1 242 33.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 3.3e-24 116.3 244 38.1
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 4.3e-24 115.9 80 68.8
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 7.3e-24 115.2 242 33.5
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 7.3e-24 115.2 244 35.2
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 9.5e-24 114.8 242 32.6
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 1.6e-23 114.0 247 37.7
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.1e-23 113.6 244 32.4
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 3.6e-23 112.8 239 33.5
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 6.2e-23 112.1 79 63.3
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 3.1e-22 109.8 242 32.2
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.0e-22 109.4 242 30.6
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 8.9e-22 108.2 230 36.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.4e-21 106.3 244 30.7
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 4.4e-21 105.9 271 29.9
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 2.9e-20 103.2 246 30.9
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 4.9e-20 102.4 244 30.7
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 8.3e-20 101.7 272 29.0
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.9e-19 100.5 249 32.1
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 7.0e-19 98.6 101 49.5
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 7.0e-19 98.6 101 49.5
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 9.2e-19 98.2 251 33.5
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.2e-18 97.8 242 33.1
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 2.7e-18 96.7 237 32.9
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 7.8e-18 95.1 74 58.1
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.0e-17 94.7 72 63.9
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 2.3e-17 93.6 80 58.8
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.9e-17 92.8 80 55.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 5.1e-17 92.4 249 31.7
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 2.5e-16 90.1 243 29.6
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 4.3e-16 89.4 231 30.7
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 4.3e-16 89.4 42 95.2
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 5.6e-16 89.0 235 29.8
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 7.3e-16 88.6 231 29.9
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 7.3e-16 88.6 239 29.7
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 7.3e-16 88.6 231 29.9
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.6e-15 87.4 231 29.9
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.6e-15 87.4 235 29.8
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.8e-15 86.7 240 27.9
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.8e-15 86.7 238 29.4
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.7e-15 85.9 231 29.0
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 4.7e-15 85.9 244 27.9
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 6.2e-15 85.5 234 28.6
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 6.2e-15 85.5 234 28.6
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 6.2e-15 85.5 81 49.4
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.1e-14 84.7 90 51.1
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.1e-14 84.7 239 27.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.1e-14 84.7 234 29.5
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.1e-14 84.7 190 31.1
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.8e-14 84.0 232 30.2
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.1e-14 83.2 78 51.3
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 5.2e-14 82.4 86 51.2
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 6.8e-14 82.0 240 29.2
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.5e-13 80.9 241 29.0
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 1.9e-11 73.9 231 28.1
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 1.9e-11 73.9 84 41.7
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.1e-11 72.8 242 31.8
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 9.2e-11 71.6 188 29.8
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 9.2e-11 71.6 77 45.5
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.0e-09 68.2 182 29.1
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 1.7e-09 67.4 86 52.3
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.0e-09 66.6 87 46.0
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 5.1e-09 65.9 78 46.2
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 1.5e-08 64.3 90 52.2
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.1e-06 56.6 88 34.1


User provided reference genes

Program Settings