Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.4e-175 618.2 312 100.0
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.1e-123 444.9 312 76.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 9.7e-114 414.1 314 71.3
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.8e-107 393.3 327 67.9
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.5e-95 352.1 312 62.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.5e-93 347.1 313 63.6
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.5e-93 346.3 312 62.8
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.0e-90 336.7 312 60.3
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.0e-90 336.7 312 60.3
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.0e-90 336.7 312 61.2
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.4e-90 335.5 312 60.9
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.3e-89 334.0 315 60.0
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.3e-89 334.0 312 60.6
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.7e-89 333.6 315 60.6
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.7e-89 333.6 313 60.7
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.8e-89 332.8 312 61.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-88 330.9 312 59.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.4e-88 328.6 312 59.0
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.0e-88 328.2 312 59.0
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.6e-87 327.0 313 60.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.6e-87 327.0 312 60.3
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 4.5e-87 325.5 314 60.5
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 5.9e-87 325.1 313 60.1
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.7e-87 324.7 313 60.1
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.0e-86 324.3 312 59.9
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.3e-86 323.9 313 61.7
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.7e-86 323.6 312 59.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.7e-86 323.6 313 59.1
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.8e-86 322.4 312 59.9
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 5.0e-86 322.0 311 60.1
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.5e-86 321.6 312 59.9
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.1e-85 320.9 315 58.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.1e-85 320.9 313 59.4
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 7.2e-85 318.2 312 59.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 9.5e-85 317.8 312 57.7
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.2e-84 317.4 311 57.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-84 317.0 312 57.4
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.6e-84 317.0 312 58.0
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.1e-84 316.6 313 57.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-84 316.6 313 57.8
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.8e-84 316.2 314 56.4
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.8e-84 316.2 318 58.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.8e-84 316.2 313 57.8
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-84 315.8 313 57.5
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-84 315.8 313 57.5
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-84 315.8 313 57.5
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.7e-84 315.5 313 59.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 4.7e-84 315.5 316 58.2
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 6.1e-84 315.1 312 57.1
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.1e-84 315.1 313 57.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 8.0e-84 314.7 312 58.0
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.0e-83 314.3 312 59.6
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.4e-83 313.9 313 56.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.8e-83 313.5 313 57.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 4.0e-83 312.4 311 57.9
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 6.8e-83 311.6 317 58.4
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 3.4e-82 309.3 315 57.5
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 3.4e-82 309.3 315 57.8
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 7.5e-82 308.1 313 56.9
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.8e-82 307.8 315 57.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.3e-81 307.4 314 57.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-81 307.4 315 56.8
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.8e-81 306.2 311 55.3
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 6.3e-81 305.1 316 54.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 4.1e-80 302.4 319 55.8
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.2e-79 300.8 313 56.2
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.2e-79 300.8 314 56.7
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.6e-79 300.4 312 57.4
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.0e-79 300.1 313 55.6
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.0e-79 300.1 311 56.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.5e-79 299.3 314 54.5
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.0e-78 297.7 307 54.4
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.8e-78 295.8 313 54.3
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 5.0e-78 295.4 313 54.3
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 5.0e-78 295.4 307 56.4
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 5.0e-78 295.4 313 56.9
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 6.6e-78 295.0 308 54.5
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.1e-77 294.3 322 54.3
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.5e-77 293.9 307 54.1
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.5e-77 293.9 318 55.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.9e-77 293.5 311 53.7
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.9e-77 293.5 307 53.7
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.5e-77 293.1 311 53.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.5e-77 293.1 316 53.8
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.5e-77 293.1 308 54.5
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.3e-77 292.7 307 54.4
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.3e-77 292.7 308 54.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.3e-77 292.7 313 55.3
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 4.3e-77 292.4 308 53.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 5.6e-77 292.0 308 54.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 7.3e-77 291.6 313 52.7
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 9.5e-77 291.2 314 54.5
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 9.5e-77 291.2 320 54.4
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-76 290.8 315 55.9
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.6e-76 290.4 315 54.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.8e-76 289.7 316 55.1
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 8.0e-76 288.1 318 54.7
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 8.0e-76 288.1 313 53.0
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.0e-75 287.7 323 54.2
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.8e-75 287.0 303 55.8
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.0e-75 286.2 313 54.3
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.0e-75 285.8 302 55.3
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-74 284.3 318 52.8
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-74 284.3 315 54.3
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.6e-74 283.1 324 53.4
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 4.4e-74 282.3 318 54.1
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 9.8e-74 281.2 313 52.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.3e-73 280.8 313 52.4
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.3e-73 280.8 284 57.0
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.9e-73 279.6 311 52.1
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.4e-73 278.5 313 52.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.1e-72 277.7 302 55.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.2e-72 276.2 304 56.2
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.1e-72 275.8 297 54.2
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.6e-71 273.9 313 51.4
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.6e-71 273.9 313 51.4
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.6e-71 273.9 313 51.4
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 2.7e-71 273.1 303 53.8
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.9e-69 266.9 313 50.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.6e-69 265.4 310 51.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 7.3e-69 265.0 317 49.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 9.5e-69 264.6 304 54.3
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.6e-68 263.8 304 52.6
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.6e-68 262.7 323 53.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.6e-68 262.7 283 54.4
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.8e-67 260.4 288 54.5
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 5.2e-67 258.8 308 51.9
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-66 257.7 261 56.7
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 4.4e-66 255.8 314 49.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.8e-66 255.4 297 52.9
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.9e-64 250.4 307 47.9
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.9e-61 240.4 313 46.3
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.1e-60 236.9 315 44.8
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.3e-57 227.6 307 47.2
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.7e-57 226.1 315 43.2
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.4e-56 222.2 298 45.6
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.2e-55 221.1 314 43.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 7.8e-55 218.4 303 46.2
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.9e-53 213.8 207 56.0
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.7e-52 209.1 207 55.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 4.7e-52 209.1 312 41.3
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 7.6e-50 201.8 120 81.7
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.4e-48 195.7 280 46.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-46 190.3 228 51.3
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 5.1e-46 189.1 314 40.1
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.6e-46 188.7 228 50.9
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.5e-45 187.6 111 80.2
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.1e-44 183.7 117 78.6
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.5e-39 166.4 335 36.4
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.9e-37 160.6 136 66.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.3e-37 159.8 259 43.2
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 7.6e-34 148.7 350 33.4
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.3e-30 137.9 128 62.5
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.2e-26 124.8 355 30.7
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 3.8e-25 119.8 111 63.1
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 8.4e-25 118.6 95 61.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.7e-23 113.6 307 29.6
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.5e-23 113.2 89 58.4
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.3e-22 111.3 69 75.4
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.9e-22 109.8 95 60.0
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.0e-17 95.1 90 48.9
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.1e-16 91.7 126 49.2
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-16 91.3 74 66.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.9e-16 90.9 125 36.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 9.3e-16 88.6 74 63.5
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.6e-12 77.8 86 57.0
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 8.2e-12 75.5 86 50.0
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 5.3e-11 72.8 139 38.8
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 3.2e-08 63.5 95 40.0
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.1e-07 60.8 103 48.5


User provided reference genes

Program Settings