Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0046100 Salix brachista HOM05D000294 ORTHO05D000177 1.8e-90 335.9 172 100.0
Potri.003G075600 Populus trichocarpa HOM05D000294 ORTHO05D000177 1.9e-55 219.5 175 68.0
Sabra01G0132700 Salix brachista HOM05D000294 ORTHO05D000177 3.9e-48 195.3 185 61.6
Potri.001G159200 Populus trichocarpa HOM05D000294 ORTHO05D000177 2.5e-47 192.6 185 61.1
FAN21G4012 Fragaria x ananassa HOM05D000294 ORTHO05D000177 1.6e-41 173.3 136 69.1
FAN25G0397 Fragaria x ananassa HOM05D000294 ORTHO05D000177 1.8e-40 169.9 136 69.1
Rhsim13G0129000 Rhododendron simsii HOM05D000294 ORTHO05D000177 3.3e-39 165.6 139 64.7
FAN16G2025 Fragaria x ananassa HOM05D000294 ORTHO05D000177 5.6e-39 164.9 136 67.6
Prupe.4G115600 Prunus persica HOM05D000294 ORTHO05D000177 6.2e-38 161.4 187 52.4
Manes.16G052100 Manihot esculenta HOM05D000294 ORTHO05D000177 1.1e-37 160.6 185 51.9
CiPaw.09G074100 Carya illinoinensis HOM05D000294 ORTHO05D000177 2.4e-37 159.5 185 52.4
QL11p013119 Quercus lobata HOM05D000294 ORTHO05D000177 5.3e-37 158.3 185 52.4
Nn7g38277 Nelumbo nucifera HOM05D000294 ORTHO05D000177 1.5e-36 156.8 181 50.3
Hma1.2p1_0640F.1_g194140 Hydrangea macrophylla HOM05D000294 ORTHO05D000177 2.2e-35 152.9 185 49.2
RcHm_v2.0_Chr5g0020661 Rosa chinensis HOM05D000294 ORTHO05D000177 2.2e-35 152.9 191 49.7
Duzib132G0190 Durio zibethinus HOM05D000294 ORTHO05D000177 2.9e-35 152.5 185 50.3
COL.COLO4_17633 Corchorus olitorius HOM05D000294 ORTHO05D000177 6.5e-35 151.4 180 51.1
MD05G1248500 Malus domestica HOM05D000294 ORTHO05D000177 6.5e-35 151.4 188 48.4
Thecc.02G005800 Theobroma cacao HOM05D000294 ORTHO05D000177 6.5e-35 151.4 186 50.0
CSS0005021 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 8.4e-35 151.0 186 48.9
Ciclev10016385m.g Citrus clementina HOM05D000294 ORTHO05D000177 1.1e-34 150.6 185 50.3
CiPaw.10G062600 Carya illinoinensis HOM05D000294 ORTHO05D000177 1.4e-34 150.2 187 51.9
MBI18_g44048_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D000177 4.2e-34 148.7 186 48.9
GSVIVG01012125001 Vitis vinifera HOM05D000294 ORTHO05D000177 1.2e-33 147.1 187 48.1
TAR627G0988 Trochodendron aralioides HOM05D000294 ORTHO05D000177 1.6e-33 146.7 184 48.9
Atru.chr10.415 Acer truncatum HOM05D000294 ORTHO05D000177 2.7e-33 146.0 187 49.2
FvH4_3g12690 Fragaria vesca HOM05D000294 ORTHO05D000177 4.6e-33 145.2 190 49.5
ClCG01G025620 Citrullus lanatus HOM05D000294 ORTHO05D000177 6.0e-33 144.8 184 48.4
Cpa.g.sc30.133 Carica papaya HOM05D000294 ORTHO05D000177 1.0e-32 144.1 188 48.9
MELO3C007023.2 Cucumis melo HOM05D000294 ORTHO05D000177 1.0e-32 144.1 163 52.1
TWI38G2334 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 3.9e-32 142.1 187 49.2
Actinidia22424 Actinidia chinensis HOM05D000294 ORTHO05D000177 1.1e-31 140.6 187 48.7
Duzib052G0979 Durio zibethinus HOM05D000294 ORTHO05D000177 2.5e-31 139.4 187 49.2
Eucgr.E04309 Eucalyptus grandis HOM05D000294 ORTHO05D000177 3.3e-31 139.0 180 49.4
Nitab4.5_0000443g0100 Nicotiana tabacum HOM05D000294 ORTHO05D000177 7.4e-31 137.9 186 46.2
Dinv17499 Davidia involucrata HOM05D000294 ORTHO05D000177 1.6e-30 136.7 112 64.3
CsaV3_6G052850 Cucumis sativus L. HOM05D000294 ORTHO05D000177 2.8e-30 136.0 184 46.2
Lj1C1147T4 Lonicera japonica HOM05D000294 ORTHO05D000177 3.7e-30 135.6 112 64.3
Manes.03G075532 Manihot esculenta HOM05D000294 ORTHO05D000177 3.7e-30 135.6 186 48.9
Cfa000668 Carpinus fangiana HOM05D000294 ORTHO05D000177 4.8e-30 135.2 187 50.3
ClCG03G004210 Citrullus lanatus HOM05D000294 ORTHO05D000177 4.8e-30 135.2 184 47.3
Sed0020569 Sechium edule HOM05D000294 ORTHO05D000177 4.8e-30 135.2 183 47.0
MD10G1229000 Malus domestica HOM05D000294 ORTHO05D000177 6.3e-30 134.8 189 45.0
Haze_06151 Corylus avellana HOM05D000294 ORTHO05D000177 8.2e-30 134.4 187 49.7
Nitab4.5_0006246g0030 Nicotiana tabacum HOM05D000294 ORTHO05D000177 8.2e-30 134.4 184 45.1
Sopen02g017650 Solanum pennellii HOM05D000294 ORTHO05D000177 1.4e-29 133.7 185 44.3
Manes.03G075500 Manihot esculenta HOM05D000294 ORTHO05D000177 2.4e-29 132.9 186 48.4
CAN.G2053.1 Capsicum annuum HOM05D000294 ORTHO05D000177 4.1e-29 132.1 185 43.8
Cc09_g05570 Coffea canephora HOM05D000294 ORTHO05D000177 2.6e-28 129.4 189 44.4
Glyma.09G052400 Glycine max HOM05D000294 ORTHO05D000177 2.6e-28 129.4 175 46.9
Sed0010860 Sechium edule HOM05D000294 ORTHO05D000177 3.4e-28 129.0 188 45.2
Solyc02g068510.2 Solanum lycopersicum HOM05D000294 ORTHO05D000177 3.4e-28 129.0 185 43.2
Lj2A343G73 Lonicera japonica HOM05D000294 ORTHO05D000177 4.5e-28 128.6 140 55.0
Peaxi162Scf00199g00612 Petunia axillaris HOM05D000294 ORTHO05D000177 4.5e-28 128.6 184 44.0
CANSAT35G1247 Cannabis sativa HOM05D000294 ORTHO05D000177 5.9e-28 128.3 194 43.8
Glyma.15G158600 Glycine max HOM05D000294 ORTHO05D000177 1.0e-27 127.5 175 46.3
CsaV3_1G010140 Cucumis sativus L. HOM05D000294 ORTHO05D000177 2.2e-27 126.3 191 43.5
arahy.Tifrunner.gnm1.ann1.CX7L4G Arachis hypogaea HOM05D000294 ORTHO05D000177 3.8e-27 125.6 178 44.9
VMungo1309G0767 Vigna mungo HOM05D000294 ORTHO05D000177 6.5e-27 124.8 174 47.7
PSO541G0894 Papaver somniferum HOM05D000294 ORTHO05D000177 1.9e-26 123.2 184 46.2
CDE05G2082 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 2.5e-26 122.9 191 44.5
Lj6g0001831 Lotus japonicus HOM05D000294 ORTHO05D000177 2.5e-26 122.9 175 45.1
Phvul.009G241300 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 5.5e-26 121.7 176 46.0
Lsat_1_v5_gn_2_61160 Lactuca sativa HOM05D000294 ORTHO05D000177 7.2e-26 121.3 183 45.9
TWI15G0108 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 1.6e-25 120.2 188 44.1
PSO675G4387 Papaver somniferum HOM05D000294 ORTHO05D000177 2.1e-25 119.8 188 44.7
CDE11G0571 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 3.6e-25 119.0 186 44.1
Lalb_Chr18g0052201 Lupinus albus HOM05D000294 ORTHO05D000177 7.9e-25 117.9 175 41.7
MSTRG.7602 Avicennia marina HOM05D000294 ORTHO05D000177 1.8e-24 116.7 177 44.1
CDE06G2754 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 2.3e-24 116.3 184 41.3
Oeu056053.1 Olea europaea HOM05D000294 ORTHO05D000177 5.1e-24 115.2 187 42.2
Migut.M01999 Erythranthe guttata HOM05D000294 ORTHO05D000177 6.7e-24 114.8 193 42.5
ECA238G2136 Erigeron canadensis HOM05D000294 ORTHO05D000177 1.5e-23 113.6 185 41.1
HanXRQChr14g0440151 Helianthus annuus HOM05D000294 ORTHO05D000177 4.3e-23 112.1 177 42.9
MBI18_g08631_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D000177 4.3e-23 112.1 133 48.1
Medtr2g036170 Medicago truncatula HOM05D000294 ORTHO05D000177 8.2e-22 107.8 171 45.0
Thhalv10009789m.g Eutrema salsugineum HOM05D000294 ORTHO05D000177 9.1e-21 104.4 178 41.6
Oeu058946.1 Olea europaea HOM05D000294 ORTHO05D000177 1.5e-20 103.6 187 41.2
DCAR_003770 Daucus carota HOM05D000294 ORTHO05D000177 2.0e-20 103.2 185 40.0
arahy.Tifrunner.gnm1.ann1.47BD5H Arachis hypogaea HOM05D000294 ORTHO05D000177 2.6e-20 102.8 177 40.7
arahy.Tifrunner.gnm1.ann1.C4KZJS Arachis hypogaea HOM05D000294 ORTHO05D000177 4.5e-20 102.1 105 52.4
arahy.Tifrunner.gnm1.ann1.L85JRJ Arachis hypogaea HOM05D000294 ORTHO05D000177 5.9e-20 101.7 177 40.7
Psat1g149560 Pisum sativum HOM05D000294 ORTHO05D000177 1.3e-19 100.5 176 41.5
Lalb_Chr20g0114241 Lupinus albus HOM05D000294 ORTHO05D000177 1.7e-19 100.1 103 51.5
THA.LOC104798561 Tarenaya hassleriana HOM05D000294 ORTHO05D000177 2.2e-19 99.8 188 40.4
MSTRG.16364 Avicennia marina HOM05D000294 ORTHO05D000177 1.1e-18 97.4 176 38.6
A08p10830 Brassica napus HOM05D000294 ORTHO05D000177 1.1e-18 97.4 178 39.9
BraA08t33079Z Brassica rapa HOM05D000294 ORTHO05D000177 1.1e-18 97.4 178 39.9
HPP92_005954 Vanilla planifolia HOM05D000294 ORTHO05D000177 1.1e-18 97.4 176 39.2
Eucgr.D00032 Eucalyptus grandis HOM05D000294 ORTHO05D000177 2.5e-18 96.3 210 37.1
Sp1g26890 Schrenkiella parvula HOM05D000294 ORTHO05D000177 4.2e-18 95.5 180 38.3
CDE02G1926 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 7.2e-18 94.7 136 41.9
ATR0763G081 Amborella trichopoda HOM05D000294 ORTHO05D000177 1.6e-17 93.6 187 36.4
Medtr4g094680 Medicago truncatula HOM05D000294 ORTHO05D000177 3.6e-17 92.4 181 38.1
AT1G31040 Arabidopsis thaliana HOM05D000294 ORTHO05D000177 7.9e-17 91.3 178 36.5
Lalb_Chr15g0083871 Lupinus albus HOM05D000294 ORTHO05D000177 1.0e-16 90.9 98 52.0
SGA_v2.0_scaffold175G39351 Striga asiatica HOM05D000294 ORTHO05D000177 1.4e-16 90.5 177 37.9
A07p09540 Brassica napus HOM05D000294 ORTHO05D000177 1.8e-16 90.1 181 37.0
BraA07t28748Z Brassica rapa HOM05D000294 ORTHO05D000177 1.8e-16 90.1 181 37.0
AL1G45440 Arabidopsis lyrata HOM05D000294 ORTHO05D000177 3.0e-16 89.4 178 35.4
Carub.0001s2942 Capsella rubella HOM05D000294 ORTHO05D000177 3.9e-16 89.0 181 36.5
C07p14670 Brassica napus HOM05D000294 ORTHO05D000177 5.1e-16 88.6 179 36.9
BraA09t39047Z Brassica rapa HOM05D000294 ORTHO05D000177 8.8e-16 87.8 181 38.1
BolC8t48180H Brassica oleracea HOM05D000294 ORTHO05D000177 1.1e-15 87.4 182 36.8
BcaB07g32764 Brassica carinata HOM05D000294 ORTHO05D000177 1.5e-15 87.0 178 36.5
Psat7g088520 Pisum sativum HOM05D000294 ORTHO05D000177 1.5e-15 87.0 184 38.6
A09p35190 Brassica napus HOM05D000294 ORTHO05D000177 2.0e-15 86.7 174 36.2
HPP92_009501 Vanilla planifolia HOM05D000294 ORTHO05D000177 3.3e-15 85.9 182 34.1
BolC7t41969H Brassica oleracea HOM05D000294 ORTHO05D000177 4.4e-15 85.5 179 36.3
Sc17g0004180 Simmondsia chinensis HOM05D000294 ORTHO05D000177 4.4e-15 85.5 203 34.0
Sed0000531 Sechium edule HOM05D000294 ORTHO05D000177 2.8e-14 82.8 175 39.4
BcaB04g18185 Brassica carinata HOM05D000294 ORTHO05D000177 3.7e-14 82.4 182 35.7
BcaC05g27134 Brassica carinata HOM05D000294 ORTHO05D000177 3.7e-14 82.4 179 36.3
C05p30210 Brassica napus HOM05D000294 ORTHO05D000177 3.7e-14 82.4 183 35.5
BolC5t31759H Brassica oleracea HOM05D000294 ORTHO05D000177 3.7e-14 82.4 183 35.5
CARHR030560 Cardamine hirsuta HOM05D000294 ORTHO05D000177 1.1e-13 80.9 181 37.0
Lj7A534G34 Lonicera japonica HOM05D000294 ORTHO05D000177 1.8e-13 80.1 146 36.3
PGR004G1349 Punica granatum HOM05D000294 ORTHO05D000177 2.4e-13 79.7 115 43.5
CSS0035634 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 1.2e-12 77.4 147 42.2
MELO3C002404.2 Cucumis melo HOM05D000294 ORTHO05D000177 1.2e-12 77.4 66 59.1
Lj7A533T25 Lonicera japonica HOM05D000294 ORTHO05D000177 1.2e-12 77.4 149 35.6
TPR.G15081 Trifolium pratense HOM05D000294 ORTHO05D000177 1.2e-12 77.4 109 45.0
SalBow8G1110 Salvia bowleyana HOM05D000294 ORTHO05D000177 2.6e-12 76.3 176 34.1
Zm00001eb389840 Zea mays HOM05D000294 ORTHO05D000177 3.4e-12 75.9 204 31.9
BcaC07g37786 Brassica carinata HOM05D000294 ORTHO05D000177 5.0e-11 72.0 168 33.9
Nitab4.5_0000859g0360 Nicotiana tabacum HOM05D000294 ORTHO05D000177 1.1e-10 70.9 151 37.7
TPR.G17967 Trifolium pratense HOM05D000294 ORTHO05D000177 1.1e-10 70.9 100 44.0
MBI16_g17458_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D031263 1.9e-10 70.1 149 36.2
Glyma.08G086900 Glycine max HOM05D000294 ORTHO05D000177 4.2e-10 68.9 148 38.5
COL.COLO4_12509 Corchorus olitorius HOM05D000294 ORTHO05D000177 5.5e-10 68.6 148 34.5
vmacro11711 Vaccinium macrocarpon HOM05D009692 ORTHO05D011920 5.5e-10 68.6 90 50.0
Actinidia18724 Actinidia chinensis HOM05D000294 ORTHO05D000177 9.4e-10 67.8 183 33.3
Actinidia12193 Actinidia chinensis HOM05D000294 ORTHO05D000177 1.6e-09 67.0 184 32.1
EL10Ac8g18802 Beta vulgaris HOM05D000294 ORTHO05D000177 4.7e-09 65.5 145 37.2
DCAR_001291 Daucus carota HOM05D000294 ORTHO05D000177 4.7e-09 65.5 99 44.4
AUR62041463 Chenopodium quinoa HOM05D000294 ORTHO05D000177 1.0e-08 64.3 147 36.1
PGSC0003DMG400030728 Solanum tuberosum HOM05D000294 ORTHO05D000177 3.9e-08 62.4 154 33.1
AUR62011240 Chenopodium quinoa HOM05D000294 ORTHO05D000177 5.2e-08 62.0 147 34.7
Sed0009864 Sechium edule HOM05D000294 ORTHO05D000177 8.8e-08 61.2 167 30.5
Zm00001eb233230 Zea mays HOM05D000294 ORTHO05D000177 8.8e-08 61.2 141 33.3
Glyma.05G132300 Glycine max HOM05D000294 ORTHO05D000177 1.1e-07 60.8 144 35.4
CSS0044238 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 2.0e-07 60.1 183 32.2
Actinidia22755 Actinidia chinensis HOM05D000294 ORTHO05D000177 7.4e-07 58.2 99 38.4
Actinidia22810 Actinidia chinensis HOM05D000294 ORTHO05D000177 7.4e-07 58.2 99 38.4
CDE12G0312 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 7.4e-07 58.2 186 28.0
Lj9A566T52 Lonicera japonica HOM05D000294 ORTHO05D000177 9.7e-07 57.8 186 29.0
Ciclev10021750m.g Citrus clementina HOM05D000294 ORTHO05D000177 1.3e-06 57.4 181 28.2
Phvul.002G190500 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 2.2e-06 56.6 134 34.3
VMungo0251G0002 Vigna mungo HOM05D000294 ORTHO05D000177 2.8e-06 56.2 137 32.8
AUR62007482 Chenopodium quinoa HOM05D000294 ORTHO05D000177 3.7e-06 55.8 161 31.1


User provided reference genes

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