Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0040300 Salix brachista HOM05D000033 ORTHO05D349685 4.6e-49 197.6 101 100.0
Potri.003G068800 Populus trichocarpa HOM05D000033 ORTHO05D002890 1.4e-16 89.7 176 42.0
Potri.001G166300 Populus trichocarpa HOM05D000033 ORTHO05D002890 3.3e-15 85.1 176 39.8
Medtr8g021350 Medicago truncatula HOM05D000033 ORTHO05D002890 1.1e-10 70.1 165 34.5
Ca_23405_v3 Cicer arietinum L. HOM05D000033 ORTHO05D002890 2.5e-10 68.9 155 35.5
Actinidia32202 Actinidia chinensis HOM05D000033 ORTHO05D002890 3.2e-10 68.6 115 41.7
Cpa.g.sc25.145 Carica papaya HOM05D000033 ORTHO05D002890 3.2e-10 68.6 170 37.1
Prupe.7G195600 Prunus persica HOM05D000033 ORTHO05D002890 4.2e-10 68.2 165 33.9
Manes.04G147800 Manihot esculenta HOM05D000033 ORTHO05D002890 5.5e-10 67.8 165 33.3
arahy.Tifrunner.gnm1.ann1.3J0SIK Arachis hypogaea HOM05D000033 ORTHO05D002890 7.2e-10 67.4 169 34.3
arahy.Tifrunner.gnm1.ann1.DQ1S7W Arachis hypogaea HOM05D000033 ORTHO05D002890 7.2e-10 67.4 169 34.3
CiPaw.02G134000 Carya illinoinensis HOM05D000033 ORTHO05D002890 9.4e-10 67.0 165 35.8
ClCG11G001350 Citrullus lanatus HOM05D000033 ORTHO05D002890 9.4e-10 67.0 161 32.3
Dinv37848 Davidia involucrata HOM05D000033 ORTHO05D002890 9.4e-10 67.0 169 36.1
Prupe.3G037900 Prunus persica HOM05D000033 ORTHO05D002890 9.4e-10 67.0 171 33.3
TWI15G1040 Tripterygium wilfordii HOM05D000033 ORTHO05D002890 9.4e-10 67.0 165 32.7
Lalb_Chr07g0181291 Lupinus albus HOM05D000033 ORTHO05D002890 1.2e-09 66.6 169 33.7
DCAR_024766 Daucus carota HOM05D000033 ORTHO05D002890 2.1e-09 65.9 155 34.2
Lj4g0015783 Lotus japonicus HOM05D000033 ORTHO05D002890 2.1e-09 65.9 165 33.9
Sed0027641 Sechium edule HOM05D000033 ORTHO05D002890 2.1e-09 65.9 166 31.9
Ca_09311_v3 Cicer arietinum L. HOM05D000033 ORTHO05D002890 2.7e-09 65.5 165 33.9
MELO3C004667.2 Cucumis melo HOM05D000033 ORTHO05D002890 2.7e-09 65.5 169 30.8
PGR142G0546 Punica granatum HOM05D000033 ORTHO05D002890 2.7e-09 65.5 177 33.3
Rhsim08G0240900 Rhododendron simsii HOM05D000033 ORTHO05D002890 2.7e-09 65.5 169 34.3
TPR.G12656 Trifolium pratense HOM05D000033 ORTHO05D002890 2.7e-09 65.5 157 34.4
Oeu060638.1 Olea europaea HOM05D000033 ORTHO05D002890 3.6e-09 65.1 165 32.7
Lalb_Chr23g0276351 Lupinus albus HOM05D000033 ORTHO05D002890 4.7e-09 64.7 168 32.7
Medtr4g124990 Medicago truncatula HOM05D000033 ORTHO05D002890 4.7e-09 64.7 165 33.9
Psat4g018760 Pisum sativum HOM05D000033 ORTHO05D002890 4.7e-09 64.7 165 33.9
QL05p003821 Quercus lobata HOM05D000033 ORTHO05D002890 4.7e-09 64.7 169 32.5
TAR468G0015 Trochodendron aralioides HOM05D000033 ORTHO05D002890 4.7e-09 64.7 165 34.5
GSVIVG01015046001 Vitis vinifera HOM05D000033 ORTHO05D002890 4.7e-09 64.7 169 32.0
DCAR_028486 Daucus carota HOM05D000033 ORTHO05D002890 6.1e-09 64.3 153 32.7
Lalb_Chr04g0253711 Lupinus albus HOM05D000033 ORTHO05D002890 6.1e-09 64.3 170 33.5
Dinv42414 Davidia involucrata HOM05D000033 ORTHO05D002890 8.0e-09 63.9 165 32.7
MD02G1095500 Malus domestica HOM05D000033 ORTHO05D002890 8.0e-09 63.9 175 33.1
Nn6g35680 Nelumbo nucifera HOM05D000033 ORTHO05D002890 8.0e-09 63.9 170 32.9
arahy.Tifrunner.gnm1.ann1.7INM0C Arachis hypogaea HOM05D000033 ORTHO05D002890 1.0e-08 63.5 169 32.0
arahy.Tifrunner.gnm1.ann1.BDAD6K Arachis hypogaea HOM05D000033 ORTHO05D002890 1.0e-08 63.5 169 32.0
ECA234G2715 Erigeron canadensis HOM05D000033 ORTHO05D002890 1.0e-08 63.5 155 32.9
Manes.11G016800 Manihot esculenta HOM05D000033 ORTHO05D002890 1.0e-08 63.5 157 33.8
Dinv25538 Davidia involucrata HOM05D000033 ORTHO05D002890 1.4e-08 63.2 169 30.8
TWI59G1264 Tripterygium wilfordii HOM05D000033 ORTHO05D002890 1.4e-08 63.2 169 33.7
VMungo1215G0141 Vigna mungo HOM05D000033 ORTHO05D002890 1.4e-08 63.2 155 32.9
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.8e-08 62.8 167 31.7
Nitab4.5_0006232g0070 Nicotiana tabacum HOM05D000033 ORTHO05D002890 1.8e-08 62.8 169 33.7
Peaxi162Scf00038g01945 Petunia axillaris HOM05D000033 ORTHO05D002890 1.8e-08 62.8 169 33.1
Thecc.06G123800 Theobroma cacao HOM05D000033 ORTHO05D002890 1.8e-08 62.8 169 34.9
VMungo0331G1204 Vigna mungo HOM05D000033 ORTHO05D002890 1.8e-08 62.8 168 32.7
Actinidia30239 Actinidia chinensis HOM05D000033 ORTHO05D002890 2.3e-08 62.4 155 32.3
AUR62025295 Chenopodium quinoa HOM05D000033 ORTHO05D002890 2.3e-08 62.4 42 69.0
Glyma.17G047900 Glycine max HOM05D000033 ORTHO05D002890 2.3e-08 62.4 165 33.3
Lalb_Chr08g0232681 Lupinus albus HOM05D000033 ORTHO05D002890 2.3e-08 62.4 168 31.5
Sc08g0009090 Simmondsia chinensis HOM05D000033 ORTHO05D002890 2.3e-08 62.4 66 50.0
Solyc03g122230.2 Solanum lycopersicum HOM05D000033 ORTHO05D002890 2.3e-08 62.4 169 33.7
Sopen03g040970 Solanum pennellii HOM05D000033 ORTHO05D002890 2.3e-08 62.4 169 33.1
Lalb_Chr12g0200251 Lupinus albus HOM05D000033 ORTHO05D002890 3.0e-08 62.0 169 32.0
Medtr2g042710 Medicago truncatula HOM05D000033 ORTHO05D002890 3.0e-08 62.0 170 31.8
SGA_v2.0_scaffold296G47551 Striga asiatica HOM05D000033 ORTHO05D002890 3.0e-08 62.0 145 31.0
AUR62028301 Chenopodium quinoa HOM05D000033 ORTHO05D002890 4.0e-08 61.6 40 70.0
Cc06_g12470 Coffea canephora HOM05D000033 ORTHO05D002890 4.0e-08 61.6 165 32.7
Phvul.010G127500 Phaseolus vulgaris HOM05D000033 ORTHO05D002890 4.0e-08 61.6 168 31.5
CANSAT56G3684 Cannabis sativa HOM05D000033 ORTHO05D002890 5.2e-08 61.2 157 31.8
Glyma.13G111800 Glycine max HOM05D000033 ORTHO05D002890 5.2e-08 61.2 158 31.6
TPR.G29089 Trifolium pratense HOM05D000033 ORTHO05D002890 5.2e-08 61.2 170 31.2
vmacro17120 Vaccinium macrocarpon HOM05D000033 ORTHO05D002890 5.2e-08 61.2 165 30.9
Aqoxy7G01013 Aquilegia oxysepala HOM05D000033 ORTHO05D002890 6.7e-08 60.8 166 31.9
Cpa.g.sc28.11 Carica papaya HOM05D000033 ORTHO05D002890 6.7e-08 60.8 169 30.2
CiPaw.03G203600 Carya illinoinensis HOM05D000033 ORTHO05D002890 8.8e-08 60.5 162 29.6
MD15G1220000 Malus domestica HOM05D000033 ORTHO05D002890 8.8e-08 60.5 155 32.3
Psat4g167520 Pisum sativum HOM05D000033 ORTHO05D002890 8.8e-08 60.5 155 31.0
Atru.chr7.1735 Acer truncatum HOM05D000033 ORTHO05D002890 1.1e-07 60.1 165 31.5
Ah.09g229060 Amaranthus hybridus HOM05D000033 ORTHO05D002890 1.1e-07 60.1 43 69.8
MSTRG.26482 Avicennia marina HOM05D000033 ORTHO05D002890 1.1e-07 60.1 180 31.1
Sabra06G0109100 Salix brachista HOM05D000033 ORTHO05D002890 1.1e-07 60.1 170 31.2
TAR624G0383 Trochodendron aralioides HOM05D000033 ORTHO05D002890 1.1e-07 60.1 171 33.3
Lsat_1_v5_gn_5_139740 Lactuca sativa HOM05D000033 ORTHO05D002890 1.5e-07 59.7 154 30.5
Peaxi162Scf00418g00037 Petunia axillaris HOM05D000033 ORTHO05D002890 1.5e-07 59.7 165 30.3
QL11p001238 Quercus lobata HOM05D000033 ORTHO05D002890 1.5e-07 59.7 163 30.1
PGSC0003DMG400002902 Solanum tuberosum HOM05D000033 ORTHO05D002890 1.5e-07 59.7 169 31.4
Duzib160G0585 Durio zibethinus HOM05D000033 ORTHO05D002890 2.0e-07 59.3 171 32.2
Eucgr.J02800 Eucalyptus grandis HOM05D000033 ORTHO05D002890 2.0e-07 59.3 178 29.8
GSVIVG01016722001 Vitis vinifera HOM05D000033 ORTHO05D002890 2.0e-07 59.3 187 29.4
CANSAT56G0225 Cannabis sativa HOM05D000033 ORTHO05D002890 2.6e-07 58.9 153 32.7
Haze_16062 Corylus avellana HOM05D000033 ORTHO05D002890 2.6e-07 58.9 155 31.0
HanXRQChr08g0214881 Helianthus annuus HOM05D000033 ORTHO05D002890 2.6e-07 58.9 157 30.6
Hma1.2p1_0169F.1_g074400 Hydrangea macrophylla HOM05D000033 ORTHO05D002890 2.6e-07 58.9 155 31.6
Nitab4.5_0004331g0030 Nicotiana tabacum HOM05D000033 ORTHO05D002890 2.6e-07 58.9 165 28.5
Phvul.003G129400 Phaseolus vulgaris HOM05D000033 ORTHO05D002890 2.6e-07 58.9 172 30.2
PGSC0003DMG400022900 Solanum tuberosum HOM05D000033 ORTHO05D002890 2.6e-07 58.9 169 32.5
Carub.0005s0892 Capsella rubella HOM05D000033 ORTHO05D002890 3.3e-07 58.5 155 31.0
Ca_02216_v3 Cicer arietinum L. HOM05D000033 ORTHO05D002890 3.3e-07 58.5 168 31.5
Lalb_Chr10g0101361 Lupinus albus HOM05D000033 ORTHO05D002890 3.3e-07 58.5 169 31.4
VMungo1309G0935 Vigna mungo HOM05D000033 ORTHO05D002890 3.3e-07 58.5 154 31.8
Cc04_g01090 Coffea canephora HOM05D000033 ORTHO05D002890 4.4e-07 58.2 169 33.1
Sopen05g020750 Solanum pennellii HOM05D000033 ORTHO05D002890 4.4e-07 58.2 166 29.5
PGSC0003DMG400003280 Solanum tuberosum HOM05D000033 ORTHO05D002890 4.4e-07 58.2 165 29.1
TPR.G16742 Trifolium pratense HOM05D000033 ORTHO05D002890 4.4e-07 58.2 42 66.7
Atru.chr1.4070 Acer truncatum HOM05D000033 ORTHO05D002890 5.7e-07 57.8 168 31.5
EL10Ac7g16440 Beta vulgaris HOM05D000033 ORTHO05D002890 5.7e-07 57.8 33 81.8
Cfa002965 Carpinus fangiana HOM05D000033 ORTHO05D002890 5.7e-07 57.8 167 29.9
Glyma.16G009900 Glycine max HOM05D000033 ORTHO05D002890 5.7e-07 57.8 168 31.5
Hma1.2p1_0179F.1_g079350 Hydrangea macrophylla HOM05D000033 ORTHO05D002890 5.7e-07 57.8 169 31.4
RcHm_v2.0_Chr2g0146351 Rosa chinensis HOM05D000033 ORTHO05D002890 5.7e-07 57.8 171 29.8
Sc14g0000490 Simmondsia chinensis HOM05D000033 ORTHO05D002890 5.7e-07 57.8 165 27.9
Actinidia39640 Actinidia chinensis HOM05D000033 ORTHO05D002890 7.5e-07 57.4 56 55.4
CAN.G1661.21 Capsicum annuum HOM05D000033 ORTHO05D002890 7.5e-07 57.4 170 32.9
Eucgr.C00787 Eucalyptus grandis HOM05D000033 ORTHO05D002890 7.5e-07 57.4 167 30.5
Lj5C33T2 Lonicera japonica HOM05D000033 ORTHO05D002890 7.5e-07 57.4 170 30.6
Lj3g0013355 Lotus japonicus HOM05D000033 ORTHO05D002890 7.5e-07 57.4 46 67.4
Potri.006G139700 Populus trichocarpa HOM05D000033 ORTHO05D002890 7.5e-07 57.4 170 28.8
BcaC01g02112 Brassica carinata HOM05D000033 ORTHO05D002890 9.7e-07 57.0 157 31.2
A06p22670 Brassica napus HOM05D000033 ORTHO05D002890 9.7e-07 57.0 157 31.2
BolC3t19086H Brassica oleracea HOM05D000033 ORTHO05D002890 9.7e-07 57.0 157 31.2
BraA06t25351Z Brassica rapa HOM05D000033 ORTHO05D002890 9.7e-07 57.0 157 31.2
CAN.G387.5 Capsicum annuum HOM05D000033 ORTHO05D002890 9.7e-07 57.0 165 29.7
Migut.I01103 Erythranthe guttata HOM05D000033 ORTHO05D002890 9.7e-07 57.0 169 31.4
Migut.L01580 Erythranthe guttata HOM05D000033 ORTHO05D002890 9.7e-07 57.0 150 30.7
Glyma.15G179300 Glycine max HOM05D000033 ORTHO05D002890 9.7e-07 57.0 169 32.0
RcHm_v2.0_Chr2g0095451 Rosa chinensis HOM05D000033 ORTHO05D002890 9.7e-07 57.0 168 30.4
Duzib168G0904 Durio zibethinus HOM05D000033 ORTHO05D002890 1.3e-06 56.6 176 30.7
Duzib235G1488 Durio zibethinus HOM05D000033 ORTHO05D002890 1.3e-06 56.6 47 66.0
Glyma.07G041200 Glycine max HOM05D000033 ORTHO05D002890 1.3e-06 56.6 168 30.4
Solyc05g025780.4 Solanum lycopersicum HOM05D000033 ORTHO05D002890 1.3e-06 56.6 58 48.3
vmacro15050 Vaccinium macrocarpon HOM05D000033 ORTHO05D002890 1.3e-06 56.6 169 32.5
Nitab4.5_0000024g0300 Nicotiana tabacum HOM05D000033 ORTHO05D002890 1.7e-06 56.2 173 28.3
BcaB01g01231 Brassica carinata HOM05D000033 ORTHO05D002890 2.2e-06 55.8 174 29.9
FAN09G4123 Fragaria x ananassa HOM05D000033 ORTHO05D002890 2.2e-06 55.8 170 27.6
Lalb_Chr17g0343491 Lupinus albus HOM05D000033 ORTHO05D002890 2.2e-06 55.8 175 29.1
Sp6g23800 Schrenkiella parvula HOM05D000033 ORTHO05D002890 2.2e-06 55.8 174 30.5
Solyc12g009190.2 Solanum lycopersicum HOM05D000033 ORTHO05D002890 2.2e-06 55.8 155 30.3
AT3G42880 Arabidopsis thaliana HOM05D000033 ORTHO05D002890 2.8e-06 55.5 176 29.5
CARHR152390 Cardamine hirsuta HOM05D000033 ORTHO05D002890 2.8e-06 55.5 155 31.0
DCAR_022664 Daucus carota HOM05D000033 ORTHO05D002890 2.8e-06 55.5 156 29.5
PGR044G1513 Punica granatum HOM05D000033 ORTHO05D002890 2.8e-06 55.5 153 31.4
SpUn0007_0040 Schrenkiella parvula HOM05D000033 ORTHO05D002890 2.8e-06 55.5 155 31.0
SpUn0130_0020 Schrenkiella parvula HOM05D000033 ORTHO05D002890 2.8e-06 55.5 155 31.0
Ah.14g084770 Amaranthus hybridus HOM05D000033 ORTHO05D002890 3.7e-06 55.1 43 65.1
Thhalv10002439m.g Eutrema salsugineum HOM05D000033 ORTHO05D002890 3.7e-06 55.1 155 31.0
FAN28G0770 Fragaria x ananassa HOM05D000033 ORTHO05D002890 3.7e-06 55.1 176 30.1
Phvul.009G225700 Phaseolus vulgaris HOM05D000033 ORTHO05D002890 3.7e-06 55.1 154 31.2
Psat1g139600 Pisum sativum HOM05D000033 ORTHO05D002890 3.7e-06 55.1 169 30.8
Sc15g0000560 Simmondsia chinensis HOM05D000033 ORTHO05D002890 3.7e-06 55.1 44 59.1
AL5G21120 Arabidopsis lyrata HOM05D000033 ORTHO05D002890 4.8e-06 54.7 155 30.3
CiPaw.04G141900 Carya illinoinensis HOM05D000033 ORTHO05D002890 4.8e-06 54.7 165 30.3
Ciclev10007699m.g Citrus clementina HOM05D000033 ORTHO05D002890 4.8e-06 54.7 157 28.7
Peaxi162Scf00928g00133 Petunia axillaris HOM05D000033 ORTHO05D002890 4.8e-06 54.7 155 30.3
Sopen12g004140 Solanum pennellii HOM05D000033 ORTHO05D002890 4.8e-06 54.7 177 29.4
AL6G32250 Arabidopsis lyrata HOM05D000033 ORTHO05D002890 6.3e-06 54.3 157 31.2
Cfa003513 Carpinus fangiana HOM05D000033 ORTHO05D002890 6.3e-06 54.3 157 29.9
Duzib150G0857 Durio zibethinus HOM05D000033 ORTHO05D002890 6.3e-06 54.3 153 30.7
Duzib187G1834 Durio zibethinus HOM05D000033 ORTHO05D002890 6.3e-06 54.3 176 30.1
FAN05G1373 Fragaria x ananassa HOM05D000033 ORTHO05D002890 6.3e-06 54.3 157 28.7
Lj6g0000698 Lotus japonicus HOM05D000033 ORTHO05D002890 6.3e-06 54.3 158 29.1
Sabra01G0126900 Salix brachista HOM05D000033 ORTHO05D002890 6.3e-06 54.3 47 63.8
A06p23120 Brassica napus HOM05D000033 ORTHO05D002890 8.2e-06 53.9 155 31.0
BraA06t25414Z Brassica rapa HOM05D000033 ORTHO05D002890 8.2e-06 53.9 155 31.0
Carub.0006s1903 Capsella rubella HOM05D000033 ORTHO05D002890 8.2e-06 53.9 155 31.0
CARHR192120 Cardamine hirsuta HOM05D000033 ORTHO05D002890 8.2e-06 53.9 155 29.7
COL.COLO4_30789 Corchorus olitorius HOM05D000033 ORTHO05D002890 8.2e-06 53.9 33 81.8
Thhalv10015893m.g Eutrema salsugineum HOM05D000033 ORTHO05D002890 8.2e-06 53.9 155 31.0
Lj4A915T65 Lonicera japonica HOM05D000033 ORTHO05D002890 8.2e-06 53.9 45 60.0
PSO104G0273 Papaver somniferum HOM05D000033 ORTHO05D002890 8.2e-06 53.9 155 30.3


User provided reference genes

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