Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0030800 Salix brachista HOM05D003190 ORTHO05D003745 6.2e-52 207.2 107 100.0
Potri.002G137400 Populus trichocarpa HOM05D003190 ORTHO05D003745 6.2e-20 100.9 54 94.4
Sabra14G0034200 Salix brachista HOM05D003190 ORTHO05D003745 1.1e-19 100.1 62 82.3
Potri.014G047200 Populus trichocarpa HOM05D003190 ORTHO05D003745 3.1e-19 98.6 62 82.3
CANSAT21G0456 Cannabis sativa HOM05D003190 ORTHO05D003745 4.6e-15 84.7 56 76.8
CANSAT21G1264 Cannabis sativa HOM05D003190 ORTHO05D003745 4.6e-15 84.7 56 76.8
Manes.01G272900 Manihot esculenta HOM05D003190 ORTHO05D003745 1.8e-14 82.8 54 75.9
Manes.05G054500 Manihot esculenta HOM05D003190 ORTHO05D003745 3.9e-14 81.6 54 74.1
TWI59G1064 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 5.1e-14 81.3 54 75.9
Duzib138G0899 Durio zibethinus HOM05D003190 ORTHO05D003745 1.1e-13 80.1 54 75.9
Hund17090 Selenicereus undatus HOM05D003190 ORTHO05D003745 1.5e-13 79.7 54 74.1
Eucgr.D01237 Eucalyptus grandis HOM05D003190 ORTHO05D003745 1.9e-13 79.3 54 77.8
PGR042G3195 Punica granatum HOM05D003190 ORTHO05D003745 1.9e-13 79.3 54 75.9
CiPaw.14G020800 Carya illinoinensis HOM05D003190 ORTHO05D003745 2.5e-13 79.0 54 72.2
TWI14G0166 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 3.3e-13 78.6 54 75.9
TWI23G0403 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 4.3e-13 78.2 54 74.1
Atru.chr5.131 Acer truncatum HOM05D003190 ORTHO05D003745 5.6e-13 77.8 54 72.2
COL.COLO4_12413 Corchorus olitorius HOM05D003190 ORTHO05D003745 5.6e-13 77.8 54 72.2
Eucgr.L01589 Eucalyptus grandis HOM05D003190 ORTHO05D003745 7.4e-13 77.4 54 75.9
Thecc.01G394400 Theobroma cacao HOM05D003190 ORTHO05D003745 7.4e-13 77.4 56 67.9
Cpa.g.sc101.14 Carica papaya HOM05D003190 ORTHO05D003745 1.3e-12 76.6 54 70.4
Gohir.D08G040200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.3e-12 76.6 54 68.5
Gorai.004G039100 Gossypium raimondii HOM05D003190 ORTHO05D003745 1.3e-12 76.6 54 68.5
MELO3C022274.2 Cucumis melo HOM05D003190 ORTHO05D003745 1.6e-12 76.3 54 70.4
AL1G10140 Arabidopsis lyrata HOM05D003190 ORTHO05D003745 2.1e-12 75.9 54 70.4
MSTRG.20693 Avicennia marina HOM05D003190 ORTHO05D003745 2.1e-12 75.9 54 74.1
CsaV3_6G008580 Cucumis sativus L. HOM05D003190 ORTHO05D003745 2.1e-12 75.9 54 70.4
Aa31LG1G11460 Aethionema arabicum HOM05D003190 ORTHO05D003745 2.8e-12 75.5 54 68.5
Oeu020085.3 Olea europaea HOM05D003190 ORTHO05D003745 2.8e-12 75.5 53 73.6
Sc02g0003110 Simmondsia chinensis HOM05D003190 ORTHO05D003745 2.8e-12 75.5 54 66.7
Solyc01g090290.4 Solanum lycopersicum HOM05D003190 ORTHO05D003745 2.8e-12 75.5 54 74.1
Sopen01g036080 Solanum pennellii HOM05D003190 ORTHO05D003745 2.8e-12 75.5 54 74.1
HPP92_001540 Vanilla planifolia HOM05D000263 ORTHO05D000213 2.8e-12 75.5 52 71.2
Peaxi162Scf00475g00516 Petunia axillaris HOM05D003190 ORTHO05D003745 3.7e-12 75.1 54 72.2
PGSC0003DMG400026050 Solanum tuberosum HOM05D003190 ORTHO05D003745 3.7e-12 75.1 54 74.1
AT1G02090 Arabidopsis thaliana HOM05D003190 ORTHO05D003745 4.8e-12 74.7 54 68.5
Gohir.A11G075600 Gossypium hirsutum HOM05D003190 ORTHO05D003745 4.8e-12 74.7 54 70.4
Prupe.2G129800 Prunus persica HOM05D003190 ORTHO05D003745 4.8e-12 74.7 54 68.5
QL04p030379 Quercus lobata HOM05D003190 ORTHO05D003745 4.8e-12 74.7 54 70.4
AUR62013747 Chenopodium quinoa HOM05D003190 ORTHO05D003745 6.2e-12 74.3 54 68.5
AUR62023404 Chenopodium quinoa HOM05D003190 ORTHO05D003745 6.2e-12 74.3 54 68.5
Gorai.007G085900 Gossypium raimondii HOM05D003190 ORTHO05D003745 6.2e-12 74.3 54 68.5
THA.LOC104814067 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 6.2e-12 74.3 54 66.7
ATR0057G124 Amborella trichopoda HOM05D003190 ORTHO05D003745 8.2e-12 73.9 54 66.7
MSTRG.17130 Avicennia marina HOM05D003190 ORTHO05D003745 8.2e-12 73.9 54 70.4
Gohir.A08G029500 Gossypium hirsutum HOM05D003190 ORTHO05D003745 8.2e-12 73.9 54 66.7
Gohir.A12G096900 Gossypium hirsutum HOM05D003190 ORTHO05D003745 8.2e-12 73.9 54 70.4
Oeu000052.1 Olea europaea HOM05D003190 ORTHO05D003745 8.2e-12 73.9 54 70.4
Hund27406 Selenicereus undatus HOM05D003190 ORTHO05D003745 8.2e-12 73.9 54 68.5
Dinv44067 Davidia involucrata HOM05D003190 ORTHO05D003745 1.1e-11 73.6 54 70.4
Thhalv10008523m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 1.1e-11 73.6 54 64.8
Gohir.D11G080200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.1e-11 73.6 54 68.5
MD02G1211700 Malus domestica HOM05D003190 ORTHO05D003745 1.1e-11 73.6 54 64.8
CAN.G1473.15 Capsicum annuum HOM05D003190 ORTHO05D003745 1.4e-11 73.2 54 68.5
CiPaw.13G026700 Carya illinoinensis HOM05D003190 ORTHO05D003745 1.4e-11 73.2 54 68.5
ClCG06G002540 Citrullus lanatus HOM05D003190 ORTHO05D003745 1.4e-11 73.2 54 68.5
Ciclev10021825m.g Citrus clementina HOM05D003190 ORTHO05D003745 1.8e-11 72.8 53 67.9
FAN01G1555 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.8e-11 72.8 54 68.5
FAN03G0648 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.8e-11 72.8 54 68.5
FAN06G3948 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.8e-11 72.8 67 61.2
FAN10G1008 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.8e-11 72.8 54 68.5
Gohir.D12G099800 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.8e-11 72.8 54 68.5
Gorai.008G108700 Gossypium raimondii HOM05D003190 ORTHO05D003745 1.8e-11 72.8 54 68.5
HanXRQChr06g0167931 Helianthus annuus HOM05D003190 ORTHO05D003745 1.8e-11 72.8 54 72.2
Lsat_1_v5_gn_4_39820 Lactuca sativa HOM05D003190 ORTHO05D003745 1.8e-11 72.8 56 69.6
Nn1g00857 Nelumbo nucifera HOM05D003190 ORTHO05D003745 1.8e-11 72.8 54 70.4
MD07G1107100 Malus domestica HOM05D003190 ORTHO05D003745 2.4e-11 72.4 54 64.8
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 2.4e-11 72.4 38 92.1
SGA_v2.0_scaffold52G19224 Striga asiatica HOM05D003190 ORTHO05D003745 2.4e-11 72.4 54 70.4
Cc02_g25080 Coffea canephora HOM05D003190 ORTHO05D003745 3.1e-11 72.0 54 72.2
Migut.B01538 Erythranthe guttata HOM05D003190 ORTHO05D003745 3.1e-11 72.0 55 69.1
PSO063G4643 Papaver somniferum HOM05D003190 ORTHO05D003745 3.1e-11 72.0 54 66.7
PSO782G2887 Papaver somniferum HOM05D003190 ORTHO05D003745 3.1e-11 72.0 54 66.7
Sp1g00180 Schrenkiella parvula HOM05D003190 ORTHO05D003745 3.1e-11 72.0 54 64.8
BcaB03g14242 Brassica carinata HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 63.0
Carub.0001s0013 Capsella rubella HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 66.7
Cfa011075 Carpinus fangiana HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 64.8
Haze_02841 Corylus avellana HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 64.8
Duzib133G1461 Durio zibethinus HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 66.7
Thhalv10026057m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 64.8
FvH4_5g19860 Fragaria vesca HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 66.7
FvH4_7g10110 Fragaria vesca HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 66.7
FAN04G2686 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 66.7
FAN06G0700 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 68.5
FAN18G2349 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 66.7
MD07G1106500 Malus domestica HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 61.1
Nitab4.5_0004620g0020 Nicotiana tabacum HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 72.2
THA.LOC104801488 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 63.0
TAR374G0382 Trochodendron aralioides HOM05D003190 ORTHO05D003745 4.0e-11 71.6 54 68.5
BcaC07g42436 Brassica carinata HOM05D003190 ORTHO05D003745 5.3e-11 71.2 54 63.0
A09p69340 Brassica napus HOM05D003190 ORTHO05D003745 5.3e-11 71.2 54 63.0
BolC8t52924H Brassica oleracea HOM05D003190 ORTHO05D003745 5.3e-11 71.2 54 63.0
HanXRQChr13g0414471 Helianthus annuus HOM05D003190 ORTHO05D003745 6.9e-11 70.9 54 64.8
RcHm_v2.0_Chr7g0204651 Rosa chinensis HOM05D003190 ORTHO05D003745 6.9e-11 70.9 51 70.6
SalBow5G0141 Salvia bowleyana HOM05D003190 ORTHO05D003745 6.9e-11 70.9 54 66.7
BcaC06g34922 Brassica carinata HOM05D003190 ORTHO05D003745 9.0e-11 70.5 54 63.0
BcaC07g42340 Brassica carinata HOM05D003190 ORTHO05D003745 9.0e-11 70.5 54 63.0
C07p21780 Brassica napus HOM05D003190 ORTHO05D003745 9.0e-11 70.5 54 63.0
BolC7t42709H Brassica oleracea HOM05D003190 ORTHO05D003745 9.0e-11 70.5 54 63.0
Dinv43620 Davidia involucrata HOM05D003190 ORTHO05D003745 9.0e-11 70.5 54 64.8
FAN13G1610 Fragaria x ananassa HOM05D003190 ORTHO05D003745 9.0e-11 70.5 54 66.7
Lalb_Chr19g0126531 Lupinus albus HOM05D003190 ORTHO05D003745 9.0e-11 70.5 56 69.6
GSVIVG01018273001 Vitis vinifera HOM05D003190 ORTHO05D003745 9.0e-11 70.5 54 68.5
DCAR_029466 Daucus carota HOM05D003190 ORTHO05D003745 1.2e-10 70.1 54 64.8
Nitab4.5_0012667g0010 Nicotiana tabacum HOM05D003190 ORTHO05D003745 1.2e-10 70.1 54 72.2
RcHm_v2.0_Chr1g0347681 Rosa chinensis HOM05D003190 ORTHO05D003745 1.2e-10 70.1 54 64.8
CSS0020681 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 1.5e-10 69.7 54 64.8
Prupe.5G061700 Prunus persica HOM05D003190 ORTHO05D003745 1.5e-10 69.7 54 63.0
Actinidia12646 Actinidia chinensis HOM05D003190 ORTHO05D003745 2.0e-10 69.3 54 66.7
Ah.05g177860 Amaranthus hybridus HOM05D003190 ORTHO05D003745 2.0e-10 69.3 57 59.6
BraA09t42279Z Brassica rapa HOM05D003190 ORTHO05D003745 2.0e-10 69.3 54 61.1
Hma1.2p1_0674F.1_g201530 Hydrangea macrophylla HOM05D003190 ORTHO05D003745 2.0e-10 69.3 54 66.7
A07p14830 Brassica napus HOM05D003190 ORTHO05D003745 2.6e-10 68.9 54 59.3
BraA07t29224Z Brassica rapa HOM05D003190 ORTHO05D003745 2.6e-10 68.9 54 59.3
FAN08G1565 Fragaria x ananassa HOM05D003190 ORTHO05D003745 3.4e-10 68.6 54 63.0
EL10Ac1g00758 Beta vulgaris HOM05D003190 ORTHO05D003745 4.5e-10 68.2 54 66.7
MD04G1057800 Malus domestica HOM05D003190 ORTHO05D003745 4.5e-10 68.2 54 61.1
CDE12G0792 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 5.8e-10 67.8 54 64.8
vmacro21057 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 5.8e-10 67.8 55 65.5
Lj7C545T16 Lonicera japonica HOM05D003190 ORTHO05D003745 7.6e-10 67.4 54 66.7
Oeu063237.1 Olea europaea HOM05D003190 ORTHO05D003745 1.0e-09 67.0 54 64.8
Rhsim07G0035600 Rhododendron simsii HOM05D003190 ORTHO05D003745 1.0e-09 67.0 54 64.8
Sed0021185 Sechium edule HOM05D003190 ORTHO05D003745 1.0e-09 67.0 54 63.0
Carub.0006s3723 Capsella rubella HOM05D003190 ORTHO05D003745 1.3e-09 66.6 54 64.8
SGA_v2.0_scaffold153G36905 Striga asiatica HOM05D003190 ORTHO05D003745 1.3e-09 66.6 54 64.8
vmacro13493 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 1.3e-09 66.6 54 64.8
CDE04G2650 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 1.7e-09 66.2 54 63.0
HanXRQChr02g0046721 Helianthus annuus HOM05D003190 ORTHO05D003745 1.7e-09 66.2 56 64.3
Aqoxy3G02735 Aquilegia oxysepala HOM05D003190 ORTHO05D003745 2.2e-09 65.9 54 64.8
TAR375G0928 Trochodendron aralioides HOM05D003190 ORTHO05D003745 2.2e-09 65.9 54 66.7
VMungo1127G1897 Vigna mungo HOM05D003190 ORTHO05D003745 2.2e-09 65.9 55 61.8
Nn6g33831 Nelumbo nucifera HOM05D003190 ORTHO05D003745 2.9e-09 65.5 54 64.8
Sp6g00030 Schrenkiella parvula HOM05D003190 ORTHO05D003745 2.9e-09 65.5 54 59.3
CARHR000240 Cardamine hirsuta HOM05D003190 ORTHO05D003745 3.8e-09 65.1 54 61.1
Glyma.13G187200 Glycine max HOM05D003190 ORTHO05D003745 3.8e-09 65.1 55 61.8
Glyma.15G224900 Glycine max HOM05D003190 ORTHO05D003745 3.8e-09 65.1 55 61.8
Lj9A558T43 Lonicera japonica HOM05D003190 ORTHO05D003745 3.8e-09 65.1 54 61.1
SGA_v2.0_scaffold43G16535 Striga asiatica HOM05D003190 ORTHO05D003745 3.8e-09 65.1 65 49.2
Phvul.011G190600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 4.9e-09 64.7 55 60.0
Ciclev10021722m.g Citrus clementina HOM05D003190 ORTHO05D003745 6.5e-09 64.3 56 64.3
Migut.N01739 Erythranthe guttata HOM05D003190 ORTHO05D003745 6.5e-09 64.3 54 61.1
Aa31LG5G50 Aethionema arabicum HOM05D003190 ORTHO05D003745 1.1e-08 63.5 54 59.3
Lj1g0027839 Lotus japonicus HOM05D003190 ORTHO05D003745 1.1e-08 63.5 55 61.8
Ca_08071_v3 Cicer arietinum L. HOM05D003190 ORTHO05D003745 1.9e-08 62.8 55 61.8
ECA234G0556 Erigeron canadensis HOM05D003190 ORTHO05D003745 1.9e-08 62.8 57 57.9
Lalb_Chr03g0040361 Lupinus albus HOM05D003190 ORTHO05D003745 1.9e-08 62.8 56 60.7
Potri.003G081066 Populus trichocarpa HOM05D003190 ORTHO05D003745 2.5e-08 62.4 55 60.0
Actinidia12147 Actinidia chinensis HOM05D003190 ORTHO05D003745 3.2e-08 62.0 54 57.4
TPR.G14100 Trifolium pratense HOM05D003190 ORTHO05D003745 3.2e-08 62.0 55 60.0
CARHR248010 Cardamine hirsuta HOM05D003190 ORTHO05D003745 4.2e-08 61.6 54 57.4
arahy.Tifrunner.gnm1.ann1.9AB492 Arachis hypogaea HOM05D003190 ORTHO05D003745 5.5e-08 61.2 56 58.9
arahy.Tifrunner.gnm1.ann1.WK7TVH Arachis hypogaea HOM05D003190 ORTHO05D003745 5.5e-08 61.2 56 58.9
Psat3g098680 Pisum sativum HOM05D003190 ORTHO05D003745 5.5e-08 61.2 55 60.0
ECA236G0031 Erigeron canadensis HOM05D003190 ORTHO05D003745 7.1e-08 60.8 55 63.6
Medtr7g081735 Medicago truncatula HOM05D003190 ORTHO05D003745 1.6e-07 59.7 55 58.2
SHI13612 Sapria himalayana HOM05D003190 ORTHO05D003745 2.7e-07 58.9 47 70.2
GSVIVG01004796001 Vitis vinifera HOM05D017410 ORTHO05D019204 2.7e-07 58.9 73 49.3
COL.COLO4_04307 Corchorus olitorius HOM05D003190 ORTHO05D003745 1.8e-06 56.2 54 55.6
QL12p009727 Quercus lobata HOM05D003190 ORTHO05D003745 2.3e-06 55.8 57 54.4
CSS0044756 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 3.0e-06 55.5 54 61.1
Zm00001eb105310 Zea mays HOM05D003190 ORTHO05D003745 5.1e-06 54.7 56 51.8
SEGI_01663 Sequoiadendron giganteum HOM05D003190 ORTHO05D003745 8.7e-06 53.9 54 50.0
Zm00001eb321750 Zea mays HOM05D003190 ORTHO05D003745 8.7e-06 53.9 53 54.7


User provided reference genes

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