Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 1.4e-26 122.5 73 100.0
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 6.8e-18 93.6 65 87.7
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 8.3e-16 86.7 69 76.8
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 1.2e-14 82.8 63 79.4
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 4.6e-14 80.9 63 79.4
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 1.7e-13 79.0 65 72.3
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 2.9e-13 78.2 64 73.4
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 2.9e-13 78.2 64 73.4
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 2.9e-13 78.2 64 73.4
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 2.9e-13 78.2 64 73.4
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 8.6e-13 76.6 56 82.1
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 1.1e-12 76.3 64 73.4
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 1.5e-12 75.9 59 76.3
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 1.9e-12 75.5 64 75.0
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 2.5e-12 75.1 64 73.4
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 9.5e-12 73.2 61 75.4
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 1.2e-11 72.8 61 67.2
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 1.6e-11 72.4 61 75.4
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 1.6e-11 72.4 67 71.6
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 3.6e-11 71.2 61 73.8
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 4.7e-11 70.9 50 84.0
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 1.4e-10 69.3 68 70.6
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 4.0e-10 67.8 62 67.7
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 5.2e-10 67.4 61 68.9
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 6.8e-10 67.0 65 73.8
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 8.9e-10 66.6 67 67.2
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 2.0e-09 65.5 69 63.8
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 2.6e-09 65.1 67 70.1
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 3.4e-09 64.7 60 63.3
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 3.4e-09 64.7 61 67.2
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 5.8e-09 63.9 61 67.2
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 9.8e-09 63.2 50 80.0
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 2.2e-08 62.0 61 63.9
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 2.2e-08 62.0 67 64.2
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 2.2e-08 62.0 69 62.3
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 2.9e-08 61.6 60 61.7
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 2.9e-08 61.6 47 74.5
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 2.9e-08 61.6 61 63.9
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 6.4e-08 60.5 56 67.9
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 6.4e-08 60.5 56 67.9
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 8.3e-08 60.1 43 83.7
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 1.1e-07 59.7 64 62.5
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 1.1e-07 59.7 64 62.5
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 1.4e-07 59.3 61 60.7
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 1.4e-07 59.3 42 83.3
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 1.9e-07 58.9 63 61.9
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 1.9e-07 58.9 42 78.6
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 2.4e-07 58.5 61 62.3
Sabra03G0023900 Salix brachista HOM05D010635 ORTHO05D006336 2.4e-07 58.5 52 71.2
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 2.4e-07 58.5 41 85.4
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 2.4e-07 58.5 61 60.7
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 3.2e-07 58.2 67 61.2
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 4.1e-07 57.8 36 88.9
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 4.1e-07 57.8 67 59.7
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 4.1e-07 57.8 38 84.2
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 4.1e-07 57.8 38 84.2
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 4.1e-07 57.8 61 62.3
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 4.1e-07 57.8 36 88.9
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 5.4e-07 57.4 60 58.3
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 7.0e-07 57.0 37 86.5
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 1.2e-06 56.2 38 84.2
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 1.6e-06 55.8 36 86.1
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 1.6e-06 55.8 64 59.4
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 2.0e-06 55.5 36 83.3
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 2.0e-06 55.5 56 60.7
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 2.0e-06 55.5 42 81.0
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 2.7e-06 55.1 60 61.7
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 2.7e-06 55.1 38 81.6
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 2.7e-06 55.1 61 59.0
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 3.5e-06 54.7 61 59.0
CAN.G825.36 Capsicum annuum HOM05D007812 ORTHO05D009912 7.8e-06 53.5 59 55.9
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 7.8e-06 53.5 62 58.1


User provided reference genes

Program Settings