Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 0.0e+00 1090.1 548 100.0
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 3.1e-192 675.6 549 67.9
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.5e-165 587.0 546 61.0
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 2.7e-143 513.1 584 55.0
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 3.4e-138 496.1 518 54.8
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 2.9e-137 493.0 550 53.1
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 4.6e-135 485.7 524 55.2
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.0e-134 484.6 546 52.9
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.3e-134 483.4 543 54.0
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 5.1e-134 482.3 543 53.6
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 4.3e-133 479.2 552 51.8
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 9.6e-133 478.0 504 54.6
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.6e-132 477.2 504 54.4
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.2e-132 475.3 466 57.3
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.1e-132 474.9 537 51.4
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.8e-131 473.8 535 52.9
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.4e-131 473.4 541 53.8
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 2.4e-131 473.4 545 53.4
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 3.1e-131 473.0 466 56.2
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 5.3e-131 472.2 461 56.6
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 6.9e-131 471.9 530 53.0
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.5e-130 470.7 457 56.7
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 2.0e-130 470.3 553 51.9
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 3.4e-130 469.5 462 56.7
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 4.5e-130 469.2 526 52.3
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.5e-130 469.2 544 51.1
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 7.6e-130 468.4 534 51.7
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 9.9e-130 468.0 537 53.3
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-129 467.6 551 49.7
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.2e-129 466.8 549 49.7
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 2.9e-129 466.5 534 51.9
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 2.9e-129 466.5 533 52.3
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 3.8e-129 466.1 534 51.7
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 4.9e-129 465.7 509 52.3
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 8.4e-129 464.9 462 56.1
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 8.4e-129 464.9 533 51.2
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.1e-128 464.5 544 52.2
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.4e-128 464.2 463 55.5
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.6e-127 460.7 504 53.4
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 4.6e-127 459.1 526 52.1
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 6.0e-127 458.8 513 52.0
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.0e-126 458.0 462 53.7
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.3e-126 457.6 458 54.8
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.8e-126 457.2 541 49.5
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 3.0e-126 456.4 532 51.3
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.5e-125 454.1 525 51.6
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.5e-125 454.1 525 51.6
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.5e-125 453.4 468 54.3
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 4.3e-125 452.6 471 54.4
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 4.3e-125 452.6 504 51.0
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.1e-123 448.0 480 53.8
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.2e-122 444.5 517 50.7
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.6e-122 443.4 463 53.8
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 3.4e-122 443.0 544 49.4
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 5.8e-122 442.2 534 50.4
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 7.6e-122 441.8 457 54.0
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 1.9e-120 437.2 657 43.7
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 9.3e-120 434.9 469 53.3
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 4.6e-119 432.6 535 48.4
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 6.0e-119 432.2 457 52.1
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.8e-118 430.6 568 48.4
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.8e-118 430.6 421 56.5
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 2.3e-118 430.3 481 51.8
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 8.7e-118 428.3 519 48.4
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 8.7e-118 428.3 519 48.4
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.1e-117 427.9 492 49.6
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.1e-117 427.9 488 49.6
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 3.3e-117 426.4 460 50.4
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 4.3e-117 426.0 461 51.8
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.3e-116 424.5 465 51.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.6e-116 424.1 461 51.2
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.6e-116 424.1 506 48.4
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.6e-116 424.1 510 48.0
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.8e-116 423.3 461 51.2
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.8e-116 423.3 519 47.8
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 3.7e-116 422.9 460 50.4
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 4.8e-116 422.5 460 50.7
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 1.1e-115 421.4 456 52.9
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.8e-115 420.6 488 49.6
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.8e-115 420.6 457 51.6
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 7.2e-112 408.7 561 45.6
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 2.7e-111 406.8 462 50.2
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 3.5e-111 406.4 459 49.9
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 7.9e-111 405.2 462 50.0
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 1.3e-110 404.4 543 46.0
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 1.8e-110 404.1 460 49.8
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 1.8e-110 404.1 460 49.8
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 8.7e-110 401.7 468 48.9
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.5e-109 401.0 525 47.2
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 3.3e-109 399.8 460 48.9
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 8.2e-108 395.2 460 47.0
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.4e-107 394.4 537 47.1
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 9.0e-107 391.7 512 45.3
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.0e-105 388.3 460 47.8
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 5.0e-105 386.0 464 49.6
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 4.2e-104 382.9 468 47.9
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.4e-102 377.9 448 49.3
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.8e-102 377.5 463 47.5
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 4.3e-101 372.9 535 45.2
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.7e-101 372.5 578 42.9
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 1.0e-97 361.7 469 46.7
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 2.2e-97 360.5 543 43.6
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.8e-94 350.9 437 47.8
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 3.3e-93 346.7 347 55.6
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 6.3e-92 342.4 417 48.4
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.4e-91 341.3 460 47.8
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 5.3e-91 339.3 412 46.1
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 7.0e-91 339.0 345 54.8
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.2e-89 334.0 346 52.9
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 8.8e-86 322.0 398 44.7
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.3e-81 308.1 448 47.8
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.2e-81 307.4 465 43.4
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.0e-78 298.5 388 43.6
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.0e-78 298.5 398 44.5
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 2.0e-74 284.3 328 48.8
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 2.5e-72 277.3 442 44.1
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.3e-70 270.8 347 46.4
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 3.0e-70 270.4 419 44.6
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 5.9e-66 256.1 250 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-65 255.0 396 39.1
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.9e-65 253.8 345 43.2
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 8.0e-63 245.7 458 38.6
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.9e-57 226.9 356 39.3
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.4e-27 127.9 374 28.6
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 6.6e-25 119.8 119 56.3
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 7.3e-24 116.3 388 25.0
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 4.0e-22 110.5 191 42.9
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 2.6e-21 107.8 393 26.7
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 7.6e-21 106.3 114 52.6
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-20 105.1 65 73.8
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 3.8e-20 104.0 139 47.5
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.4e-20 102.8 72 68.1
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.4e-20 102.8 72 68.1
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 1.9e-19 101.7 139 47.5
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.2e-19 100.5 65 70.8
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.2e-19 100.5 65 70.8
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.1e-19 99.8 100 52.0
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.2e-18 99.0 65 69.2
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 7.9e-18 96.3 85 63.5
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.9e-18 96.3 65 67.7
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 7.6e-13 79.7 49 81.6
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.1e-11 75.9 383 24.0
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.0e-10 70.1 144 31.9
Atru.chr3.79 Acer truncatum HOM05D037071 ORTHO05D010002 1.4e-06 58.9 28 92.9
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.8e-06 58.5 80 43.8
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 6.9e-06 56.6 129 30.2


User provided reference genes

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