Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 3.2e-245 851.3 420 100.0
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 4.2e-237 824.3 420 96.4
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 7.2e-221 770.4 420 90.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.0e-218 762.3 420 87.9
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.3e-214 749.6 420 86.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.4e-203 713.0 420 80.7
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.6e-202 708.8 420 81.2
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 4.4e-202 708.0 420 81.2
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 3.1e-200 701.8 420 80.5
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 5.3e-200 701.0 420 80.0
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.5e-199 698.4 420 79.5
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.2e-198 695.7 420 79.0
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 5.0e-198 694.5 420 78.8
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.5e-197 692.2 420 78.6
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 6.1e-196 687.6 419 78.3
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.0e-195 686.8 420 77.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.5e-194 682.9 420 78.6
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.4e-194 681.8 420 78.6
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.2e-193 679.1 420 78.1
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.8e-192 676.0 420 77.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.4e-192 675.6 420 77.9
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 4.5e-191 671.4 420 77.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 3.8e-190 668.3 420 76.2
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 6.5e-190 667.5 420 76.9
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.9e-189 666.0 420 76.9
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 9.5e-189 663.7 420 76.4
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.2e-188 663.3 420 75.0
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.6e-188 662.9 420 76.2
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.6e-188 661.8 420 76.0
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.7e-188 661.4 420 76.4
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.4e-184 649.8 420 74.3
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.8e-184 649.4 420 74.8
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 4.1e-184 648.3 420 74.3
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 4.1e-184 648.3 420 75.0
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 7.0e-184 647.5 420 74.8
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-183 645.6 420 74.3
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.5e-183 645.2 420 74.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 5.9e-183 644.4 405 76.3
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.3e-182 642.5 420 74.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.3e-182 642.5 420 74.8
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.3e-182 642.5 420 74.3
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.5e-181 639.8 420 74.3
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 74.5
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 74.0
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 5.6e-181 637.9 421 73.4
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 7.3e-181 637.5 420 74.0
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.6e-180 635.2 420 72.6
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 8.0e-180 634.0 420 73.1
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.8e-179 630.9 420 73.1
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.5e-178 629.8 420 72.4
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 2.0e-178 629.4 421 73.4
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 3.4e-178 628.6 420 71.9
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 4.4e-178 628.2 420 71.2
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.3e-177 626.7 420 71.2
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 72.6
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 4.9e-177 624.8 420 70.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.9e-177 624.8 421 72.4
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 8.3e-177 624.0 425 71.5
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.4e-176 623.2 420 71.9
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.4e-176 622.5 421 73.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.9e-175 617.8 420 71.2
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.0e-174 617.1 420 71.4
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.3e-174 616.7 414 70.8
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.7e-174 616.3 419 71.1
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 70.7
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.6e-174 614.4 421 71.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 70.0
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.3e-173 612.1 421 71.0
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.2e-172 610.1 420 70.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 5.2e-171 604.7 420 68.1
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.5e-170 603.2 420 70.0
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.6e-170 602.4 420 69.0
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.4e-170 602.1 420 69.8
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.4e-170 602.1 408 72.1
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 4.4e-170 601.7 420 70.2
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 4.4e-170 601.7 423 71.9
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 5.8e-170 601.3 420 70.7
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.7e-169 599.7 420 68.6
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.7e-169 599.7 420 69.8
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.2e-169 599.4 420 70.5
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 4.9e-169 598.2 420 69.8
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 6.4e-169 597.8 413 69.7
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.4e-168 595.9 425 68.0
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.6e-167 593.2 425 67.5
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.0e-167 592.8 423 68.1
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 3.5e-167 592.0 426 68.5
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 7.8e-167 590.9 420 69.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 9.5e-165 583.9 422 66.6
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 2.8e-164 582.4 420 67.9
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 1.1e-163 580.5 420 67.9
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.8e-163 579.7 420 67.9
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.2e-161 572.8 421 67.5
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 2.9e-161 572.4 420 66.9
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 6.4e-161 571.2 420 66.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.5e-159 565.5 421 67.2
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 7.8e-159 564.3 420 64.8
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 64.8
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.7e-158 563.1 420 64.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.0e-158 562.4 420 65.7
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 6.6e-158 561.2 420 64.3
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.1e-157 560.5 420 65.5
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-157 560.5 377 71.6
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 4.3e-157 558.5 424 64.9
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.3e-153 547.0 420 63.6
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 7.8e-151 537.7 421 65.6
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 3.9e-150 535.4 421 61.0
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 5.1e-150 535.0 421 65.1
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.9e-149 533.1 422 64.2
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 3.3e-149 532.3 422 62.3
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.7e-148 528.5 421 63.9
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 4.6e-143 511.9 420 58.6
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 6.9e-139 498.0 425 58.4
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.7e-135 486.1 421 56.5
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 6.2e-132 474.9 357 68.3
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.8e-124 448.7 405 54.1
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 9.0e-123 444.5 425 52.9
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 2.3e-118 429.9 425 52.0
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 4.8e-116 422.2 325 64.3
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.5e-114 417.2 251 80.5
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 4.5e-114 415.6 282 72.3
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 4.8e-108 395.6 403 48.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.8e-107 393.7 422 48.6
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 3.1e-91 339.7 302 58.9
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 3.1e-91 339.7 414 43.7
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.1e-88 331.3 374 45.2
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 4.1e-83 312.8 305 51.5
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.0e-82 310.5 248 59.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 5.5e-72 275.8 317 44.2
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.4e-67 259.2 269 53.2
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 3.6e-63 246.5 134 86.6
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 6.2e-47 192.6 155 62.6
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 8.9e-46 188.7 131 69.5
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-37 161.4 99 76.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 7.8e-34 149.1 91 76.9
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-28 131.0 74 79.7
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 4.9e-28 129.8 71 81.7
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.6e-26 124.8 71 80.3
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 2.3e-25 120.9 71 78.9
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.3e-25 120.9 71 78.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 3.8e-20 103.6 104 51.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 8.4e-20 102.4 102 52.9
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 5.3e-14 83.2 430 25.3
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 5.5e-11 73.2 304 24.3
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 2.7e-10 70.9 307 24.4
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 6.0e-10 69.7 305 24.6
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 1.0e-09 68.9 307 22.8
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 1.0e-09 68.9 421 21.6
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 2.3e-09 67.8 363 22.3
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 2.3e-09 67.8 363 22.3
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 2.3e-09 67.8 307 22.1
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 3.0e-09 67.4 418 22.2
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 8.7e-09 65.9 306 22.2
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 1.1e-08 65.5 359 21.7
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 5.6e-08 63.2 243 24.3
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 9.6e-08 62.4 239 24.7
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 9.6e-08 62.4 239 25.1
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 9.6e-08 62.4 303 23.1
EL10Ac7g16924 Beta vulgaris HOM05D003488 ORTHO05D004214 1.6e-07 61.6 370 22.4
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 1.6e-07 61.6 244 28.7
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 1.6e-07 61.6 305 22.6
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 2.1e-07 61.2 431 20.9
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 4.8e-07 60.1 239 25.1
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 4.8e-07 60.1 239 25.1
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 6.2e-07 59.7 431 20.6
Thhalv10015365m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 8.2e-07 59.3 229 25.3
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 8.2e-07 59.3 76 48.7
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.1e-06 58.9 304 21.4
Lj7A357T28 Lonicera japonica HOM05D000051 ORTHO05D000015 1.4e-06 58.5 219 25.1
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 4.0e-06 57.0 193 23.8
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 6.9e-06 56.2 210 21.4
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 6.9e-06 56.2 139 28.1
Eucgr.E03703 Eucalyptus grandis HOM05D001396 ORTHO05D000493 9.0e-06 55.8 215 26.5


User provided reference genes

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