Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 1.1e-63 248.4 120 100.0
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.6e-27 128.3 145 49.0
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.5e-25 121.7 78 76.9
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 6.0e-22 109.8 121 48.8
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.0e-21 109.0 125 44.0
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 1.3e-21 108.6 150 43.3
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 3.0e-21 107.5 150 43.3
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 3.3e-20 104.0 140 42.1
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 5.6e-20 103.2 131 42.0
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 5.6e-20 103.2 150 42.7
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 5.6e-20 103.2 124 47.6
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 9.6e-20 102.4 148 39.2
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.6e-19 101.7 128 46.1
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.8e-19 100.9 143 42.7
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 1.1e-18 99.0 150 40.7
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.4e-18 98.6 148 37.8
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.4e-18 98.6 148 39.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 3.1e-18 97.4 148 39.2
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.1e-18 97.4 148 39.2
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 5.8e-17 93.2 127 44.1
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.8e-17 93.2 148 37.8
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 9.9e-17 92.4 148 37.2
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.3e-16 92.0 132 39.4
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 4.9e-16 90.1 80 55.0
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.9e-15 88.2 156 37.8
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 2.4e-15 87.8 137 41.6
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.4e-15 87.8 148 36.5
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 4.2e-15 87.0 120 41.7
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 4.2e-15 87.0 132 39.4
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.2e-14 85.5 130 38.5
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.0e-13 82.4 147 34.7
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.8e-13 81.6 147 34.0
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 5.1e-13 80.1 118 37.3
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 6.7e-13 79.7 127 39.4
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.1e-12 79.0 136 33.8
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.9e-12 78.2 145 31.0
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 4.3e-12 77.0 124 37.1
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 5.6e-12 76.6 62 64.5
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 5.6e-12 76.6 141 34.0
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 7.4e-12 76.3 98 42.9
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 3.6e-11 73.9 132 34.1
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.8e-11 73.6 131 35.9
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 4.8e-11 73.6 131 35.9
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 4.8e-11 73.6 118 37.3
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 8.1e-11 72.8 145 30.3
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 8.1e-11 72.8 121 33.1
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.1e-10 72.4 131 34.4
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.4e-10 71.2 128 35.9
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.1e-10 70.9 87 44.8
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 3.1e-10 70.9 141 29.1
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 4.0e-10 70.5 130 34.6
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 6.9e-10 69.7 130 33.8
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 9.0e-10 69.3 146 26.7
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.2e-09 68.9 130 36.2
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.5e-09 68.6 115 40.0
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.5e-09 68.6 137 32.1
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.6e-09 67.8 132 33.3
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 5.8e-09 66.6 150 32.7
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 7.6e-09 66.2 89 42.7
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 7.6e-09 66.2 87 42.5
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 7.6e-09 66.2 56 58.9
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 9.9e-09 65.9 137 29.2
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.3e-08 65.5 63 54.0
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.2e-08 64.7 150 32.7
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.2e-08 64.7 135 31.9
Gohir.A09G148000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.8e-08 63.9 47 63.8
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 6.4e-08 63.2 63 44.4
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 8.4e-08 62.8 150 32.0
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 8.4e-08 62.8 92 41.3
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 8.4e-08 62.8 98 36.7
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.4e-07 62.0 125 31.2
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.4e-07 62.0 101 35.6
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 2.4e-07 61.2 97 39.2
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 9.3e-07 59.3 130 29.2
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 9.3e-07 59.3 128 29.7
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 1.2e-06 58.9 92 33.7
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.2e-06 58.9 125 29.6
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.2e-06 58.9 86 38.4
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.2e-06 58.9 145 29.7
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.7e-06 57.8 59 47.5
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 3.5e-06 57.4 56 53.6
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 6.0e-06 56.6 125 28.8
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 7.9e-06 56.2 99 32.3
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 7.9e-06 56.2 102 33.3


User provided reference genes

Program Settings